Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3260 Acer truncatum HOM05D001468 ORTHO05D001404 1.1e-63 246.5 128 100.0
Ciclev10027692m.g Citrus clementina HOM05D001468 ORTHO05D001404 2.0e-36 156.0 124 67.7
Cpa.g.sc32.9 Carica papaya HOM05D001468 ORTHO05D001404 7.7e-33 144.1 123 67.5
CiPaw.14G100500 Carya illinoinensis HOM05D001468 ORTHO05D001404 1.1e-31 140.2 122 64.8
COL.COLO4_19888 Corchorus olitorius HOM05D001468 ORTHO05D001404 4.2e-31 138.3 124 63.7
Haze_23380 Corylus avellana HOM05D001468 ORTHO05D001404 9.4e-31 137.1 124 62.1
Cfa010019 Carpinus fangiana HOM05D001468 ORTHO05D001404 2.7e-30 135.6 124 62.1
Potri.004G203500 Populus trichocarpa HOM05D001468 ORTHO05D001404 3.6e-30 135.2 122 60.7
Dinv42560 Davidia involucrata HOM05D001468 ORTHO05D001404 6.1e-30 134.4 139 54.7
Sabra04G0137500 Salix brachista HOM05D001468 ORTHO05D001404 1.0e-29 133.7 114 61.4
Duzib168G1834 Durio zibethinus HOM05D001468 ORTHO05D001404 2.3e-29 132.5 124 60.5
Gohir.A08G004900 Gossypium hirsutum HOM05D001468 ORTHO05D001404 8.8e-29 130.6 124 60.5
Thecc.09G284600 Theobroma cacao HOM05D001468 ORTHO05D001404 8.8e-29 130.6 124 59.7
Gohir.D08G015200 Gossypium hirsutum HOM05D001468 ORTHO05D001404 1.5e-28 129.8 124 60.5
Gorai.004G009700 Gossypium raimondii HOM05D001468 ORTHO05D001404 7.4e-28 127.5 124 59.7
Potri.009G164400 Populus trichocarpa HOM05D001468 ORTHO05D001404 7.4e-28 127.5 122 57.4
Gohir.D09G095000 Gossypium hirsutum HOM05D001468 ORTHO05D001404 3.7e-27 125.2 111 61.3
Gorai.006G111700 Gossypium raimondii HOM05D001468 ORTHO05D001404 3.7e-27 125.2 111 61.3
Thecc.09G284700 Theobroma cacao HOM05D001468 ORTHO05D001404 3.7e-27 125.2 124 58.1
GSVIVG01036136001 Vitis vinifera HOM05D001468 ORTHO05D001404 4.8e-27 124.8 124 54.0
QL01p012370 Quercus lobata HOM05D001468 ORTHO05D001404 1.8e-26 122.9 124 56.5
TWI79G1302 Tripterygium wilfordii HOM05D001468 ORTHO05D001404 2.4e-26 122.5 116 56.0
TAR623G0506 Trochodendron aralioides HOM05D001468 ORTHO05D001404 2.4e-26 122.5 119 55.5
Manes.11G161400 Manihot esculenta HOM05D001468 ORTHO05D001404 3.1e-26 122.1 122 55.7
Gohir.A09G095266 Gossypium hirsutum HOM05D001468 ORTHO05D001404 4.1e-26 121.7 122 56.6
TWI79G1571 Tripterygium wilfordii HOM05D001468 ORTHO05D001404 5.3e-26 121.3 112 58.0
Nn2g14146 Nelumbo nucifera HOM05D001468 ORTHO05D001404 7.0e-26 120.9 119 54.6
Nn6g34918 Nelumbo nucifera HOM05D001468 ORTHO05D001404 7.0e-26 120.9 113 55.8
FAN16G3735 Fragaria x ananassa HOM05D001468 ORTHO05D001404 9.1e-26 120.6 126 54.8
FAN25G0444 Fragaria x ananassa HOM05D001468 ORTHO05D001404 1.2e-25 120.2 126 54.8
Prupe.6G129000 Prunus persica HOM05D001468 ORTHO05D001404 1.5e-25 119.8 120 57.5
FAN25G2902 Fragaria x ananassa HOM05D001468 ORTHO05D001404 2.6e-25 119.0 126 54.0
FvH4_3g24820 Fragaria vesca HOM05D001468 ORTHO05D001404 3.5e-25 118.6 126 54.0
FAN11G3006 Fragaria x ananassa HOM05D001468 ORTHO05D001404 3.5e-25 118.6 126 54.0
Carub.0006s2019 Capsella rubella HOM05D001468 ORTHO05D001404 7.7e-25 117.5 122 54.1
Dinv29475 Davidia involucrata HOM05D001468 ORTHO05D001404 1.7e-24 116.3 124 50.8
AT5G22450 Arabidopsis thaliana HOM05D001468 ORTHO05D001404 5.0e-24 114.8 122 54.1
FAN21G0439 Fragaria x ananassa HOM05D001468 ORTHO05D001404 6.5e-24 114.4 126 53.2
AL6G33470 Arabidopsis lyrata HOM05D001468 ORTHO05D001404 8.5e-24 114.0 122 54.9
BcaB08g36430 Brassica carinata HOM05D001468 ORTHO05D001404 8.5e-24 114.0 111 57.7
CARHR191080 Cardamine hirsuta HOM05D001468 ORTHO05D001404 1.5e-23 113.2 116 54.3
Thhalv10012493m.g Eutrema salsugineum HOM05D001468 ORTHO05D001404 1.5e-23 113.2 110 56.4
RcHm_v2.0_Chr5g0044401 Rosa chinensis HOM05D001468 ORTHO05D001404 1.5e-23 113.2 126 53.2
A10p18380 Brassica napus HOM05D001468 ORTHO05D001404 1.9e-23 112.8 111 56.8
BraA10t43919Z Brassica rapa HOM05D001468 ORTHO05D001404 1.9e-23 112.8 111 56.8
A03p10770 Brassica napus HOM05D001468 ORTHO05D001404 2.5e-23 112.5 110 57.3
Aa31LG1G13070 Aethionema arabicum HOM05D001468 ORTHO05D001404 3.2e-23 112.1 122 54.9
CANSAT54G2058 Cannabis sativa HOM05D001468 ORTHO05D001404 3.2e-23 112.1 122 52.5
MD03G1143400 Malus domestica HOM05D001468 ORTHO05D001404 7.2e-23 110.9 124 53.2
BcaC04g19574 Brassica carinata HOM05D001468 ORTHO05D001404 9.4e-23 110.5 111 55.9
BraA03t10386Z Brassica rapa HOM05D001468 ORTHO05D001404 9.4e-23 110.5 110 56.4
BcaB01g04709 Brassica carinata HOM05D001468 ORTHO05D001404 2.7e-22 109.0 110 55.5
BcaC01g06581 Brassica carinata HOM05D001468 ORTHO05D001404 3.6e-22 108.6 110 54.5
C03p12360 Brassica napus HOM05D001468 ORTHO05D001404 3.6e-22 108.6 110 54.5
BolC3t13708H Brassica oleracea HOM05D001468 ORTHO05D001404 3.6e-22 108.6 110 54.5
C09p54140 Brassica napus HOM05D001468 ORTHO05D001404 4.7e-22 108.2 111 55.0
BolC9t58285H Brassica oleracea HOM05D001468 ORTHO05D001404 4.7e-22 108.2 111 55.0
THA.LOC104810917 Tarenaya hassleriana HOM05D001468 ORTHO05D001404 4.7e-22 108.2 122 54.9
TAR633G0498 Trochodendron aralioides HOM05D001468 ORTHO05D001404 6.1e-22 107.8 113 53.1
Sabra09G0128600 Salix brachista HOM05D001468 ORTHO05D001404 8.0e-22 107.5 139 48.2
Sp6g22800 Schrenkiella parvula HOM05D001468 ORTHO05D001404 1.4e-21 106.7 110 55.5
Potri.010G238400 Populus trichocarpa HOM05D001468 ORTHO05D001404 1.8e-21 106.3 119 51.3
CSS0004564 Camellia sinensis var. sinensis HOM05D001468 ORTHO05D001404 2.3e-21 105.9 112 50.0
MD11G1164200 Malus domestica HOM05D001468 ORTHO05D001404 2.3e-21 105.9 122 51.6
PSO384G4358 Papaver somniferum HOM05D001468 ORTHO05D001404 2.3e-21 105.9 112 51.8
Thecc.10G112000 Theobroma cacao HOM05D001468 ORTHO05D001404 3.0e-21 105.5 119 49.6
Aqoxy4G02787 Aquilegia oxysepala HOM05D001468 ORTHO05D001404 4.0e-21 105.1 113 49.6
arahy.Tifrunner.gnm1.ann1.D0TANL Arachis hypogaea HOM05D001468 ORTHO05D001404 4.0e-21 105.1 122 50.8
arahy.Tifrunner.gnm1.ann1.WV99JK Arachis hypogaea HOM05D001468 ORTHO05D001404 4.0e-21 105.1 122 50.8
QL04p045985 Quercus lobata HOM05D001468 ORTHO05D001404 4.0e-21 105.1 119 52.9
MD07G1063600 Malus domestica HOM05D001468 ORTHO05D001404 5.2e-21 104.8 107 53.3
GSVIVG01001003001 Vitis vinifera HOM05D001468 ORTHO05D001404 5.2e-21 104.8 107 53.3
Ciclev10014071m.g Citrus clementina HOM05D001468 ORTHO05D001404 8.8e-21 104.0 118 50.0
CsaV3_1G014760 Cucumis sativus L. HOM05D001468 ORTHO05D001404 2.0e-20 102.8 93 63.4
PSO339G3612 Papaver somniferum HOM05D001468 ORTHO05D001404 2.0e-20 102.8 113 49.6
MD02G1256900 Malus domestica HOM05D001468 ORTHO05D001404 4.4e-20 101.7 107 53.3
Atru.chr12.1021 Acer truncatum HOM05D001468 ORTHO05D001404 5.7e-20 101.3 118 50.0
Prupe.2G075900 Prunus persica HOM05D001468 ORTHO05D001404 5.7e-20 101.3 107 53.3
Sed0010311 Sechium edule HOM05D001468 ORTHO05D001404 7.4e-20 100.9 93 59.1
PSO339G2319 Papaver somniferum HOM05D001468 ORTHO05D001404 1.3e-19 100.1 113 52.2
PSO384G0634 Papaver somniferum HOM05D001468 ORTHO05D001404 1.3e-19 100.1 113 52.2
Ca_19403_v3 Cicer arietinum L. HOM05D001468 ORTHO05D001404 1.7e-19 99.8 119 47.1
Dinv11840 Davidia involucrata HOM05D001468 ORTHO05D001404 3.7e-19 98.6 118 48.3
PGR119G2029 Punica granatum HOM05D001468 ORTHO05D001404 3.7e-19 98.6 123 45.5
Sabra10G0186700 Salix brachista HOM05D001468 ORTHO05D001404 4.8e-19 98.2 119 49.6
TWI63G1473 Tripterygium wilfordii HOM05D001468 ORTHO05D001404 1.1e-18 97.1 121 46.3
Lalb_Chr01g0004831 Lupinus albus HOM05D001468 ORTHO05D001404 1.4e-18 96.7 122 45.9
Potri.008G020600 Populus trichocarpa HOM05D001468 ORTHO05D001404 1.4e-18 96.7 119 47.9
CSS0031265 Camellia sinensis var. sinensis HOM05D001468 ORTHO05D001404 1.8e-18 96.3 118 47.5
CSS0043968 Camellia sinensis var. sinensis HOM05D001468 ORTHO05D001404 1.8e-18 96.3 118 47.5
MBI17_g25749_MAGBIO Magnolia biondii HOM05D001468 ORTHO05D001404 1.8e-18 96.3 118 47.5
MELO3C004729.2 Cucumis melo HOM05D001468 ORTHO05D001404 2.4e-18 95.9 119 51.3
TWI38G1645 Tripterygium wilfordii HOM05D001468 ORTHO05D001404 2.4e-18 95.9 121 46.3
Hund22277 Selenicereus undatus HOM05D001468 ORTHO05D001404 3.1e-18 95.5 108 50.9
TWI31G0247 Tripterygium wilfordii HOM05D001468 ORTHO05D001404 3.1e-18 95.5 112 49.1
Actinidia18603 Actinidia chinensis HOM05D001468 ORTHO05D001404 4.1e-18 95.1 113 46.9
Medtr4g053240 Medicago truncatula HOM05D001468 ORTHO05D001404 4.1e-18 95.1 122 45.1
AUR62043603 Chenopodium quinoa HOM05D001468 ORTHO05D001404 7.0e-18 94.4 108 50.9
Psat7g188200 Pisum sativum HOM05D001468 ORTHO05D001404 9.1e-18 94.0 110 47.3
vmacro10307 Vaccinium macrocarpon HOM05D001468 ORTHO05D001404 1.2e-17 93.6 119 48.7
AUR62042078 Chenopodium quinoa HOM05D001468 ORTHO05D001404 1.6e-17 93.2 108 50.0
TPR.G17221 Trifolium pratense HOM05D001468 ORTHO05D001404 1.6e-17 93.2 110 48.2
Rhsim09G0142200 Rhododendron simsii HOM05D001468 ORTHO05D001404 3.5e-17 92.0 119 47.1
Hund06780 Selenicereus undatus HOM05D001468 ORTHO05D001404 3.5e-17 92.0 108 48.1
Dinv09611 Davidia involucrata HOM05D001468 ORTHO05D001404 5.9e-17 91.3 104 48.1
ClCG08G008240 Citrullus lanatus HOM05D001468 ORTHO05D001404 7.7e-17 90.9 119 46.2
Lj3g0024252 Lotus japonicus HOM05D001468 ORTHO05D001404 7.7e-17 90.9 106 49.1
Lj3A926T42 Lonicera japonica HOM05D001468 ORTHO05D001404 1.0e-16 90.5 110 46.4
Peaxi162Scf00173g00326 Petunia axillaris HOM05D001468 ORTHO05D001404 1.0e-16 90.5 119 47.9
Lalb_Chr03g0028071 Lupinus albus HOM05D001468 ORTHO05D001404 1.7e-16 89.7 122 45.9
Sed0009342 Sechium edule HOM05D001468 ORTHO05D001404 1.7e-16 89.7 119 44.5
Solyc11g006960.2 Solanum lycopersicum HOM05D001468 ORTHO05D001404 2.2e-16 89.4 119 47.9
Sopen11g002880 Solanum pennellii HOM05D001468 ORTHO05D001404 2.9e-16 89.0 119 47.9
CDE02G0607 Ceratophyllum demersum HOM05D001468 ORTHO05D001404 3.8e-16 88.6 119 47.9
Glyma.11G183800 Glycine max HOM05D001468 ORTHO05D001404 3.8e-16 88.6 123 46.3
Ah.06g186590 Amaranthus hybridus HOM05D001468 ORTHO05D001404 5.0e-16 88.2 108 46.3
Oeu054398.1 Olea europaea HOM05D001468 ORTHO05D001404 5.0e-16 88.2 119 43.7
CsaV3_6G004200 Cucumis sativus L. HOM05D001468 ORTHO05D001404 6.5e-16 87.8 119 44.5
MELO3C030059.2 Cucumis melo HOM05D001468 ORTHO05D001404 1.5e-15 86.7 119 44.5
Migut.F01609 Erythranthe guttata HOM05D001468 ORTHO05D001404 1.5e-15 86.7 121 43.8
Hma1.2p1_0709F.1_g207170 Hydrangea macrophylla HOM05D001468 ORTHO05D001404 1.5e-15 86.7 122 43.4
Cfa011271 Carpinus fangiana HOM05D001468 ORTHO05D001404 1.9e-15 86.3 117 47.0
Haze_02510 Corylus avellana HOM05D001468 ORTHO05D001404 2.5e-15 85.9 117 47.9
Eucgr.J00489 Eucalyptus grandis HOM05D001468 ORTHO05D001404 2.5e-15 85.9 118 44.9
Glyma.12G088600 Glycine max HOM05D001468 ORTHO05D001404 4.2e-15 85.1 110 45.5
Nitab4.5_0001437g0050 Nicotiana tabacum HOM05D001468 ORTHO05D001404 5.5e-15 84.7 119 47.1
CAN.G645.9 Capsicum annuum HOM05D001468 ORTHO05D001404 9.4e-15 84.0 119 45.4
CDE08G1280 Ceratophyllum demersum HOM05D001468 ORTHO05D001404 1.6e-14 83.2 119 47.1
Sed0002215 Sechium edule HOM05D001468 ORTHO05D001404 1.6e-14 83.2 119 42.9
Lsat_1_v5_gn_2_104501 Lactuca sativa HOM05D001468 ORTHO05D001404 2.1e-14 82.8 118 41.5
Nitab4.5_0005622g0050 Nicotiana tabacum HOM05D001468 ORTHO05D001404 2.1e-14 82.8 119 46.2
CANSAT56G2626 Cannabis sativa HOM05D001468 ORTHO05D001404 2.7e-14 82.4 120 45.8
Phvul.011G093600 Phaseolus vulgaris HOM05D001468 ORTHO05D001404 4.7e-14 81.6 110 44.5
VMungo1127G2223 Vigna mungo HOM05D001468 ORTHO05D001404 6.1e-14 81.3 123 43.9
Migut.F00880 Erythranthe guttata HOM05D001468 ORTHO05D001404 8.0e-14 80.9 121 40.5
PGR142G1033 Punica granatum HOM05D001468 ORTHO05D001404 8.0e-14 80.9 118 42.4
Rhsim03G0098300 Rhododendron simsii HOM05D001468 ORTHO05D001404 1.0e-13 80.5 113 44.2
Hund18753 Selenicereus undatus HOM05D001468 ORTHO05D001404 1.0e-13 80.5 112 42.0
unitig_37.g12348 Utricularia gibba HOM05D001468 ORTHO05D001404 1.0e-13 80.5 101 46.5
Sc20g0001170 Simmondsia chinensis HOM05D001468 ORTHO05D001404 1.4e-13 80.1 100 49.0
THA.LOC104799550 Tarenaya hassleriana HOM05D001468 ORTHO05D001404 1.4e-13 80.1 118 50.0
EL10Ac4g08683 Beta vulgaris HOM05D001468 ORTHO05D001404 2.3e-13 79.3 112 45.5
Oeu036826.1 Olea europaea HOM05D001468 ORTHO05D001404 2.3e-13 79.3 119 41.2
Sabra08G0013800 Salix brachista HOM05D001468 ORTHO05D001404 3.0e-13 79.0 103 47.6
arahy.Tifrunner.gnm1.ann1.4Q6J36 Arachis hypogaea HOM05D001468 ORTHO05D001404 4.0e-13 78.6 110 40.9
arahy.Tifrunner.gnm1.ann1.HCKF4Q Arachis hypogaea HOM05D001468 ORTHO05D001404 4.0e-13 78.6 110 40.9
ClCG01G012310 Citrullus lanatus HOM05D001468 ORTHO05D001404 4.0e-13 78.6 58 69.0
Cc02_g09670 Coffea canephora HOM05D001468 ORTHO05D001404 4.0e-13 78.6 120 45.0
SGA_v2.0_scaffold62G21305 Striga asiatica HOM05D001468 ORTHO05D001404 4.0e-13 78.6 118 44.1
Glyma.10G279400 Glycine max HOM05D001468 ORTHO05D001404 6.8e-13 77.8 120 43.3
unitig_46.g18637 Utricularia gibba HOM05D001468 ORTHO05D001404 6.8e-13 77.8 105 45.7
ATR0776G073 Amborella trichopoda HOM05D001468 ORTHO05D001404 8.8e-13 77.4 127 39.4
VMungo0720G0434 Vigna mungo HOM05D001468 ORTHO05D001404 8.8e-13 77.4 120 41.7
Lj2A32G30 Lonicera japonica HOM05D001468 ORTHO05D001404 1.2e-12 77.0 103 40.8
SalBow6G4596 Salvia bowleyana HOM05D001468 ORTHO05D001404 1.2e-12 77.0 121 41.3
Ah.04g160200 Amaranthus hybridus HOM05D001468 ORTHO05D001404 2.0e-12 76.3 94 48.9
Manes.04G061300 Manihot esculenta HOM05D001468 ORTHO05D001404 2.0e-12 76.3 118 43.2
Eucgr.J00488 Eucalyptus grandis HOM05D001468 ORTHO05D001404 3.4e-12 75.5 105 42.9
SGA_v2.0_scaffold13G06457 Striga asiatica HOM05D001468 ORTHO05D001404 3.4e-12 75.5 121 38.8
Lalb_Chr03g0028061 Lupinus albus HOM05D001468 ORTHO05D001404 4.4e-12 75.1 105 45.7
Glyma.20G110300 Glycine max HOM05D001468 ORTHO05D001404 5.7e-12 74.7 127 41.7
MSTRG.9062 Avicennia marina HOM05D001468 ORTHO05D001404 1.3e-11 73.6 121 39.7
ECA238G1968 Erigeron canadensis HOM05D001468 ORTHO05D001404 1.7e-11 73.2 123 40.7
Sc09g0005360 Simmondsia chinensis HOM05D001468 ORTHO05D001404 1.7e-11 73.2 107 43.9
Actinidia34721 Actinidia chinensis HOM05D001468 ORTHO05D001404 3.7e-11 72.0 119 42.9
Cpa.g.sc5.266 Carica papaya HOM05D001468 ORTHO05D001404 3.7e-11 72.0 104 45.2
HanXRQChr11g0342131 Helianthus annuus HOM05D001468 ORTHO05D001404 4.8e-11 71.6 122 36.9
MBI15_g09708_MAGBIO Magnolia biondii HOM05D001468 ORTHO05D001404 2.4e-10 69.3 126 38.1
HPP92_009873 Vanilla planifolia HOM05D001468 ORTHO05D001404 2.4e-10 69.3 120 33.3
Lj5g0021705 Lotus japonicus HOM05D001468 ORTHO05D001404 3.1e-10 68.9 80 46.2
Os01g0967100 Oryza sativa ssp. japonica HOM05D001468 ORTHO05D001404 5.4e-10 68.2 102 37.3
Oeu025601.3 Olea europaea HOM05D001468 ORTHO05D001404 9.1e-10 67.4 93 44.1
EL10Ac7g15816 Beta vulgaris HOM05D001468 ORTHO05D001404 1.2e-09 67.0 92 43.5
Sc21g0007110 Simmondsia chinensis HOM05D001468 ORTHO05D001404 1.2e-09 67.0 116 37.1
Psat6g231160 Pisum sativum HOM05D001468 ORTHO05D001404 1.6e-09 66.6 101 38.6
Nn8g38767 Nelumbo nucifera HOM05D001468 ORTHO05D001404 2.7e-09 65.9 114 40.4
Ca_25668_v3 Cicer arietinum L. HOM05D001468 ORTHO05D001404 3.5e-09 65.5 125 34.4
Oeu036843.2 Olea europaea HOM05D001468 ORTHO05D001404 7.7e-09 64.3 68 50.0
Zm00001eb356080 Zea mays HOM05D001468 ORTHO05D001404 1.0e-08 63.9 127 32.3
Zm00001eb267350 Zea mays HOM05D001468 ORTHO05D001404 3.8e-08 62.0 127 33.1
Lalb_Chr02g0146301 Lupinus albus HOM05D001468 ORTHO05D001404 5.0e-08 61.6 119 38.7
Lalb_Chr06g0166431 Lupinus albus HOM05D001468 ORTHO05D001404 6.5e-08 61.2 104 39.4
ATR0796G235 Amborella trichopoda HOM05D001468 ORTHO05D001404 1.5e-07 60.1 125 36.0
Os05g0107300 Oryza sativa ssp. japonica HOM05D001468 ORTHO05D001404 7.2e-07 57.8 123 30.1
HanXRQChr07g0194031 Helianthus annuus HOM05D001468 ORTHO05D001404 9.4e-07 57.4 97 37.1
PSO063G6290 Papaver somniferum HOM05D001468 ORTHO05D001404 2.1e-06 56.2 113 37.2
Aqoxy7G01143 Aquilegia oxysepala HOM05D001468 ORTHO05D001404 2.7e-06 55.8 115 40.0
Psat5g058520 Pisum sativum HOM05D001468 ORTHO05D001404 8.0e-06 54.3 94 37.2


User provided reference genes

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