Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 6.8e-99 364.0 184 100.0
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 4.1e-96 354.8 184 97.8
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 5.4e-80 301.2 184 80.4
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 7.1e-80 300.8 184 81.5
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 8.6e-78 293.9 184 77.7
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 1.5e-77 293.1 184 78.3
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 5.6e-77 291.2 184 76.1
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 2.8e-76 288.9 184 75.5
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.4e-75 286.6 184 75.5
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.4e-75 286.6 183 75.4
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.1e-75 285.4 181 75.7
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 4.0e-75 285.0 184 76.6
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 4.0e-75 285.0 183 74.9
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 6.8e-75 284.3 184 75.5
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 6.8e-75 284.3 184 75.0
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 6.8e-75 284.3 181 76.2
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 2.0e-74 282.7 181 75.1
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 3.4e-74 282.0 181 75.7
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 5.8e-74 281.2 184 73.4
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 5.8e-74 281.2 182 75.3
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 5.8e-74 281.2 185 76.2
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 7.6e-74 280.8 181 74.0
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 1.7e-73 279.6 184 73.4
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 1.7e-73 279.6 184 73.4
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.2e-73 279.3 180 74.4
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 2.9e-73 278.9 185 75.7
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 6.4e-73 277.7 184 73.9
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 6.4e-73 277.7 181 74.0
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 6.4e-73 277.7 182 72.5
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 6.4e-73 277.7 184 73.4
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 8.3e-73 277.3 182 74.2
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 8.3e-73 277.3 182 74.2
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.4e-72 276.6 185 75.1
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 1.4e-72 276.6 183 74.9
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 1.9e-72 276.2 183 74.3
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 3.2e-72 275.4 184 72.3
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 3.2e-72 275.4 184 72.3
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 3.2e-72 275.4 184 72.3
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 5.4e-72 274.6 184 73.9
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 7.1e-72 274.2 183 72.7
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 7.1e-72 274.2 184 74.5
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 7.1e-72 274.2 185 71.4
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 4.6e-71 271.6 182 72.5
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 4.6e-71 271.6 183 72.1
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 4.6e-71 271.6 180 73.9
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 6.0e-71 271.2 180 71.7
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 6.0e-71 271.2 185 71.4
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 7.8e-71 270.8 184 71.7
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.3e-70 270.0 184 72.3
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 1.3e-70 270.0 182 72.0
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 1.3e-70 270.0 185 73.0
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 1.7e-70 269.6 182 72.5
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 2.3e-70 269.2 182 73.1
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 2.3e-70 269.2 180 73.3
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 3.0e-70 268.9 182 71.4
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 3.0e-70 268.9 181 70.7
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 3.0e-70 268.9 178 73.0
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 3.9e-70 268.5 180 71.7
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 3.9e-70 268.5 179 72.1
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 6.6e-70 267.7 181 71.8
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 1.5e-69 266.5 182 71.4
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.9e-69 266.2 179 73.7
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 5.6e-69 264.6 179 70.4
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 5.6e-69 264.6 181 68.5
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 5.6e-69 264.6 182 70.9
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 9.6e-69 263.8 180 72.2
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 2.8e-68 262.3 180 72.8
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 3.6e-68 261.9 179 70.9
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 8.1e-68 260.8 181 70.2
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 8.1e-68 260.8 182 67.6
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 1.1e-67 260.4 178 71.3
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 1.1e-67 260.4 178 71.3
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 1.4e-67 260.0 178 70.2
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 1.4e-67 260.0 183 69.4
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 2.4e-67 259.2 180 69.4
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 2.4e-67 259.2 178 70.8
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 4.0e-67 258.5 164 78.7
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.2e-66 256.9 182 68.7
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 1.5e-66 256.5 182 69.2
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.6e-66 255.8 176 69.9
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 5.8e-66 254.6 176 70.5
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 7.6e-66 254.2 176 71.0
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 3.8e-65 251.9 178 67.4
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.9e-65 251.5 178 67.4
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 4.9e-65 251.5 182 67.0
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 6.4e-65 251.1 180 68.9
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 6.4e-65 251.1 183 65.6
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.1e-64 250.4 182 62.6
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 2.4e-64 249.2 182 68.1
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 3.2e-64 248.8 184 67.4
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 1.2e-63 246.9 180 66.1
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 1.3e-62 243.4 177 67.2
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 3.9e-62 241.9 171 66.7
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 4.3e-61 238.4 182 65.9
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 4.8e-60 235.0 183 65.0
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 3.4e-58 228.8 180 62.2
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 5.8e-58 228.0 189 59.3
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 9.9e-58 227.3 184 60.9
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 5.4e-56 221.5 174 63.8
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.5e-53 213.4 202 53.5
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.6e-52 208.8 194 54.1
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.8e-52 208.4 201 52.2
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 6.4e-49 198.0 137 71.5
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 3.5e-47 192.2 154 63.6
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 7.9e-47 191.0 142 68.3
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 7.9e-47 191.0 175 54.3
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 7.9e-47 191.0 154 63.6
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 4.5e-42 175.3 116 73.3
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 7.9e-39 164.5 106 72.6
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 7.4e-37 157.9 175 45.7
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.1e-35 154.1 180 47.2
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 1.4e-35 153.7 106 72.6
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 2.4e-35 152.9 178 43.3
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 3.1e-35 152.5 173 45.7
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.1e-32 144.1 175 44.0
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 4.2e-32 142.1 189 41.8
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.6e-31 140.2 181 42.5
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.0e-30 137.5 90 70.0
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.0e-26 123.2 179 43.0
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.0e-26 123.2 170 38.8
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 3.2e-24 115.9 95 56.8
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.2e-20 103.2 75 68.0
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 5.3e-19 98.6 84 58.3
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 1.1e-11 74.3 182 28.6
Os05g0482501 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 9.1e-11 71.2 133 35.3
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 2.9e-09 66.2 71 40.8
SHI02767 Sapria himalayana HOM05D003111 ORTHO05D003502 6.5e-09 65.1 154 30.5
Glyma.09G189900 Glycine max HOM05D003111 ORTHO05D003502 1.9e-08 63.5 137 29.2
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 1.9e-08 63.5 138 28.3
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 1.9e-08 63.5 138 28.3
Hund26161 Selenicereus undatus HOM05D003111 ORTHO05D003502 2.5e-08 63.2 162 25.9
HanXRQChr14g0456011 Helianthus annuus HOM05D003111 ORTHO05D003502 7.2e-08 61.6 144 27.1
EL10Ac8g18506 Beta vulgaris HOM05D003111 ORTHO05D003502 1.6e-07 60.5 146 27.4
Lj5C60T4 Lonicera japonica HOM05D003111 ORTHO05D003502 1.6e-07 60.5 129 28.7
Pp3c18_21320 Physcomitrium patens HOM05D003111 ORTHO05D003502 3.6e-07 59.3 143 30.1
AagrBONN_evm.TU.Sc2ySwM_117.1809 Anthoceros agrestis HOM05D003111 ORTHO05D003502 6.1e-07 58.5 114 26.3
AagrBONN_evm.TU.Sc2ySwM_368.2057 Anthoceros agrestis HOM05D000172 ORTHO05D000273 1.0e-06 57.8 153 28.1
CAN.G756.33 Capsicum annuum HOM05D000172 ORTHO05D000273 1.0e-06 57.8 141 31.2
CDE04G0555 Ceratophyllum demersum HOM05D003111 ORTHO05D003502 1.4e-06 57.4 141 20.6
Cpa.g.sc68.12 Carica papaya HOM05D003111 ORTHO05D003502 3.0e-06 56.2 134 25.4
CDE07G1813 Ceratophyllum demersum HOM05D003111 ORTHO05D003502 4.0e-06 55.8 131 26.0
HanXRQChr10g0313371 Helianthus annuus HOM05D003111 ORTHO05D003502 5.2e-06 55.5 143 25.9
RcHm_v2.0_Chr3g0459631 Rosa chinensis HOM05D000172 ORTHO05D000273 8.8e-06 54.7 160 27.5


User provided reference genes

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