Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 7.7e-138 494.6 426 100.0
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.2e-47 194.1 278 47.5
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.5e-45 188.0 479 48.4
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 4.6e-42 176.4 232 46.1
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 6.1e-42 176.0 242 48.3
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 1.4e-41 174.9 308 53.9
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 5.1e-41 172.9 268 45.5
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 1.8e-38 164.5 273 43.6
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 5.3e-38 162.9 255 45.1
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 2.0e-37 161.0 271 42.1
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 2.2e-36 157.5 295 38.3
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 6.5e-36 156.0 274 42.7
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 6.5e-36 156.0 290 40.3
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.1e-35 155.2 288 38.5
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 1.2e-34 151.8 422 61.6
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 1.6e-34 151.4 273 40.7
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 2.1e-34 151.0 414 58.9
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 6.1e-34 149.4 422 57.6
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.9e-33 146.7 269 38.7
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 5.1e-33 146.4 476 50.8
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 6.7e-33 146.0 267 37.8
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 6.7e-33 146.0 441 56.0
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.5e-32 144.8 296 36.5
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.5e-32 144.8 253 42.7
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 4.4e-32 143.3 421 58.7
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 7.4e-32 142.5 268 38.1
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 1.3e-31 141.7 274 40.9
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 2.2e-31 141.0 268 37.7
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 8.2e-31 139.0 304 38.2
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 8.2e-31 139.0 273 38.1
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 1.1e-30 138.7 238 41.6
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 2.4e-30 137.5 267 37.8
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 4.1e-30 136.7 412 60.2
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 5.3e-30 136.3 265 36.6
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 9.1e-30 135.6 240 41.7
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.5e-29 134.8 268 37.3
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.0e-29 134.4 290 36.2
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 2.6e-29 134.0 277 38.3
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 7.7e-29 132.5 437 50.1
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 1.7e-28 131.3 316 51.9
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 3.8e-28 130.2 285 37.5
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 6.5e-28 129.4 266 35.0
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.1e-27 128.6 414 38.4
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 3.2e-27 127.1 283 35.3
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 3.2e-27 127.1 283 35.3
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 5.5e-27 126.3 447 56.6
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 5.5e-27 126.3 427 52.7
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 1.2e-26 125.2 242 38.8
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 2.1e-26 124.4 259 39.8
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 6.1e-26 122.9 277 36.1
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 1.4e-25 121.7 243 37.9
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 2.3e-25 120.9 262 34.4
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 3.0e-25 120.6 275 36.7
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 2.0e-24 117.9 267 37.8
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 4.4e-24 116.7 264 37.5
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 1.3e-23 115.2 467 52.0
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 3.7e-23 113.6 470 52.6
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 6.3e-23 112.8 444 43.2
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 1.1e-22 112.1 445 47.4
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 9.1e-22 109.0 245 31.0
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 9.1e-22 109.0 421 57.7
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 9.1e-22 109.0 422 55.9
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 3.5e-21 107.1 198 36.4
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 3.5e-21 107.1 499 50.7
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 5.0e-20 103.2 225 35.1
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 5.0e-20 103.2 291 32.0
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 8.5e-20 102.4 258 34.5
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 1.1e-19 102.1 320 27.5
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.1e-19 102.1 270 74.4
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 1.9e-19 101.3 227 33.5
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 2.5e-19 100.9 283 65.0
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 3.2e-19 100.5 258 33.7
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 7.2e-19 99.4 224 38.4
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 9.4e-19 99.0 278 30.9
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 1.2e-18 98.6 289 70.2
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 1.6e-18 98.2 428 46.3
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 3.6e-18 97.1 245 35.5
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 6.1e-18 96.3 307 30.6
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.0e-17 95.5 244 56.6
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 1.8e-17 94.7 258 33.7
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 2.3e-17 94.4 422 45.0
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 4.0e-17 93.6 448 52.9
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 5.2e-17 93.2 259 32.8
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 6.8e-17 92.8 263 32.3
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.0e-16 91.3 269 32.3
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 3.4e-16 90.5 231 34.2
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 1.1e-14 85.5 234 34.6
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 1.1e-14 85.5 237 37.1
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 2.4e-14 84.3 238 36.1
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 2.4e-14 84.3 245 35.1
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 4.1e-14 83.6 252 34.5
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 5.4e-14 83.2 267 32.6
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 5.4e-14 83.2 247 28.7
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 2.7e-13 80.9 236 35.2
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 3.5e-13 80.5 236 33.9
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 2.2e-12 77.8 235 32.8
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 9.4e-11 72.4 245 34.7
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.6e-10 71.6 187 34.8
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 3.6e-10 70.5 234 33.8
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 1.0e-09 68.9 396 46.2
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 1.0e-09 68.9 243 32.5
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 1.0e-09 68.9 256 30.1
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 1.8e-09 68.2 54 63.0
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 8.8e-09 65.9 212 59.0
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 2.6e-08 64.3 229 31.9
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 8.3e-07 59.3 44 63.6
COL.COLO4_22633 Corchorus olitorius HOM05D007535 ORTHO05D008520 1.1e-06 58.9 183 34.4
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 1.4e-06 58.5 215 31.6
Nitab4.5_0001640g0010 Nicotiana tabacum HOM05D007535 ORTHO05D008520 3.1e-06 57.4 228 29.8


User provided reference genes

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