Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 1.2e-79 299.7 144 100.0
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 4.1e-67 258.1 142 84.5
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 4.7e-63 244.6 150 79.3
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 4.7e-63 244.6 150 80.0
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 1.0e-62 243.4 149 77.9
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 6.8e-62 240.7 151 76.2
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 8.9e-62 240.4 150 76.7
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.5e-61 239.6 150 76.0
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 7.5e-61 237.3 146 77.4
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 9.8e-61 236.9 149 75.8
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 1.3e-60 236.5 144 74.3
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.7e-60 236.1 145 77.9
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 1.7e-60 236.1 151 76.8
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 2.8e-60 235.3 143 73.4
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 2.8e-60 235.3 143 73.4
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 2.8e-60 235.3 143 73.4
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 3.7e-60 235.0 143 74.1
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 3.7e-60 235.0 144 75.7
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 3.7e-60 235.0 150 76.0
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 3.7e-60 235.0 144 77.8
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 4.9e-60 234.6 143 73.4
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 4.9e-60 234.6 143 75.5
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 4.9e-60 234.6 146 76.7
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 6.3e-60 234.2 143 74.1
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 6.3e-60 234.2 143 74.1
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 6.3e-60 234.2 143 74.1
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 1.1e-59 233.4 143 73.4
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.4e-59 233.0 146 76.0
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 1.8e-59 232.6 143 72.7
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 1.8e-59 232.6 143 72.7
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.8e-59 232.6 144 75.7
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 5.4e-59 231.1 149 73.2
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 7.0e-59 230.7 140 77.1
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 7.0e-59 230.7 150 72.0
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 7.0e-59 230.7 146 74.0
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 1.2e-58 229.9 146 72.6
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 1.2e-58 229.9 145 74.5
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 1.6e-58 229.6 143 74.1
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 1.6e-58 229.6 143 74.1
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 1.6e-58 229.6 152 75.0
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 3.5e-58 228.4 144 72.2
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 5.9e-58 227.6 141 76.6
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 7.8e-58 227.3 144 71.5
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 1.3e-57 226.5 146 74.7
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 1.7e-57 226.1 151 73.5
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 1.7e-57 226.1 143 72.7
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 5.0e-57 224.6 141 75.2
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 5.0e-57 224.6 141 75.2
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 6.6e-57 224.2 146 74.0
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 6.6e-57 224.2 148 70.3
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.1e-56 223.4 146 74.0
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 1.1e-56 223.4 141 74.5
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 1.5e-56 223.0 175 64.0
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 4.3e-56 221.5 139 72.7
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 4.3e-56 221.5 132 73.5
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 4.3e-56 221.5 140 72.9
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 4.3e-56 221.5 145 69.7
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 1.2e-55 219.9 143 73.4
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.1e-55 219.2 151 72.2
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 2.8e-55 218.8 145 73.8
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 6.1e-55 217.6 149 69.8
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 1.0e-54 216.9 142 72.5
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 1.4e-54 216.5 143 72.7
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 1.8e-54 216.1 146 71.9
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 1.8e-54 216.1 141 73.0
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 3.0e-54 215.3 120 79.2
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 8.9e-54 213.8 148 67.6
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 1.2e-53 213.4 117 77.8
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 1.5e-53 213.0 144 68.8
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 3.4e-53 211.8 144 68.8
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 4.4e-53 211.5 146 71.9
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 5.8e-53 211.1 145 71.7
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 7.5e-53 210.7 132 72.0
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 7.5e-53 210.7 146 73.3
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 7.5e-53 210.7 146 74.0
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 9.8e-53 210.3 145 73.1
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 9.8e-53 210.3 147 74.8
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.9e-52 208.8 146 73.3
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 6.4e-52 207.6 147 67.3
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 6.4e-52 207.6 146 72.6
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 8.3e-52 207.2 141 70.9
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 8.3e-52 207.2 141 70.9
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.4e-51 206.5 146 71.2
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 2.4e-51 205.7 114 78.9
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 2.4e-51 205.7 146 70.5
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 4.1e-51 204.9 146 69.2
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 9.2e-51 203.8 144 68.1
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 3.5e-50 201.8 145 70.3
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 1.7e-49 199.5 143 69.2
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 2.3e-49 199.1 146 67.1
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 3.0e-49 198.7 142 69.0
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 5.0e-49 198.0 117 72.6
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.9e-48 196.1 143 65.0
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 2.5e-48 195.7 144 68.1
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 4.3e-48 194.9 143 66.4
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 7.3e-48 194.1 146 65.8
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 1.2e-47 193.4 115 75.7
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.2e-47 193.4 143 61.5
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 3.6e-47 191.8 130 71.5
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 3.6e-47 191.8 144 66.7
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.8e-46 189.5 142 66.2
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 4.4e-45 184.9 137 66.4
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 8.3e-44 180.6 142 64.1
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 1.0e-41 173.7 146 60.3
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 1.3e-41 173.3 96 78.1
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 1.7e-41 172.9 141 65.2
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 3.0e-41 172.2 141 61.7
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 5.0e-41 171.4 146 58.9
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 6.6e-41 171.0 148 58.1
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 8.6e-41 170.6 144 58.3
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 7.3e-40 167.5 86 83.7
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 7.3e-40 167.5 115 73.0
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 3.1e-38 162.2 119 66.4
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 8.9e-38 160.6 120 66.7
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 8.9e-38 160.6 84 81.0
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 5.8e-37 157.9 114 67.5
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 1.7e-36 156.4 117 61.5
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 1.9e-35 152.9 90 74.4
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 1.0e-33 147.1 112 63.4
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 5.6e-32 141.4 113 63.7
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 1.4e-30 136.7 117 60.7
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 5.2e-30 134.8 143 49.0
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.5e-29 133.3 110 61.8
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 1.6e-26 123.2 89 65.2
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 7.8e-26 120.9 122 58.2
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 1.0e-25 120.6 90 65.6
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 9.0e-22 107.5 89 60.7
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 2.2e-20 102.8 111 45.9
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 7.8e-18 94.4 82 63.4
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 7.8e-18 94.4 158 39.2
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 2.3e-17 92.8 99 43.4
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 6.2e-15 84.7 69 66.7
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 5.4e-11 71.6 73 57.5
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 1.6e-10 70.1 73 54.8


User provided reference genes

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