Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 6.8e-151 537.3 281 100.0
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 6.8e-151 537.3 281 100.0
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.5e-121 439.9 281 78.6
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 2.8e-104 382.5 287 68.6
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 4.8e-104 381.7 288 69.1
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.1e-103 380.6 282 74.1
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 4.6e-99 365.2 317 61.5
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.0e-98 364.0 281 66.2
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 3.9e-98 362.1 281 66.9
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.0e-97 359.8 287 65.9
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 4.1e-95 352.1 281 64.4
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 6.9e-95 351.3 263 68.1
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 6.9e-95 351.3 286 64.7
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.0e-94 349.7 281 65.8
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 3.4e-94 349.0 286 64.0
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.3e-93 347.1 286 64.3
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 5.5e-92 341.7 287 63.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.6e-91 340.1 292 65.8
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 7.9e-91 337.8 281 63.7
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.0e-90 337.4 284 68.0
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.8e-87 326.6 282 63.5
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 4.1e-87 325.5 280 63.2
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.0e-86 323.2 283 60.8
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 6.5e-85 318.2 289 61.2
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 4.2e-84 315.5 331 54.1
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 5.5e-84 315.1 281 64.8
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 8.0e-83 311.2 287 57.5
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.3e-82 309.7 281 58.7
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 4.0e-82 308.9 291 56.7
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.5e-81 307.0 252 63.1
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.5e-81 307.0 283 58.7
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.0e-81 306.6 282 57.8
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 3.3e-81 305.8 283 57.6
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.7e-80 303.5 282 57.4
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 3.7e-80 302.4 283 62.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.3e-80 301.6 255 62.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.1e-79 300.8 293 60.8
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.4e-79 299.7 379 47.8
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.7e-78 296.2 285 56.1
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.5e-78 295.4 255 61.2
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 7.7e-78 294.7 255 62.7
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.7e-77 293.5 392 45.7
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.9e-76 290.0 282 61.7
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 3.2e-76 289.3 262 63.4
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 5.5e-76 288.5 281 55.5
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.2e-73 280.8 310 51.3
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.2e-73 280.8 310 51.3
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.4e-73 279.3 283 55.8
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 7.5e-73 278.1 290 56.6
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.3e-72 277.3 281 52.3
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 3.1e-71 272.7 284 53.9
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.2e-67 260.8 290 54.1
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.8e-67 259.6 283 51.6
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.8e-67 259.6 283 51.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 3.6e-67 259.2 284 54.2
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.6e-67 259.2 284 54.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.5e-65 253.8 208 66.3
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 3.4e-65 252.7 292 51.0
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 4.4e-65 252.3 206 65.5
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.8e-64 249.6 255 54.1
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-63 247.7 286 50.3
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 5.0e-61 238.8 228 55.3
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 2.5e-60 236.5 261 53.6
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 2.8e-59 233.0 238 55.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.6e-59 232.6 296 48.3
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.0e-58 231.1 290 49.3
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.2e-57 227.6 238 53.4
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.5e-57 227.3 292 49.0
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.7e-56 223.8 204 58.8
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 3.7e-56 222.6 292 48.6
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 3.7e-56 222.6 292 48.6
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.1e-55 221.1 292 48.3
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.1e-55 221.1 199 58.3
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 3.2e-55 219.5 165 67.3
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 9.2e-55 218.0 296 47.3
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.2e-54 217.6 292 47.9
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 2.7e-54 216.5 295 47.1
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.7e-53 213.8 275 51.3
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 6.6e-53 211.8 290 42.8
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.5e-52 210.7 281 45.2
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.5e-52 210.7 220 52.7
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.8e-51 206.5 284 45.4
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 3.6e-51 206.1 289 45.7
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 6.2e-51 205.3 320 42.8
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 4.0e-50 202.6 321 42.4
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 4.0e-50 202.6 296 51.4
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.0e-50 202.6 220 50.9
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.0e-49 200.3 300 47.7
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 2.0e-49 200.3 295 49.5
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 2.6e-49 199.9 295 49.8
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.6e-49 199.9 230 57.0
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 3.7e-48 196.1 281 45.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 7.0e-47 191.8 205 50.2
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.0e-46 190.3 290 43.1
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 3.5e-46 189.5 286 42.0
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 6.0e-46 188.7 292 42.8
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.0e-45 186.4 275 44.0
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.9e-45 186.0 272 44.5
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 5.0e-45 185.7 234 47.0
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 8.6e-45 184.9 296 43.9
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.9e-44 183.7 374 35.3
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.8e-43 179.9 228 47.8
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 3.1e-42 176.4 285 38.6
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 6.8e-42 175.3 165 55.8
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 2.0e-41 173.7 303 39.6
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 9.9e-41 171.4 296 39.9
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.7e-40 170.6 279 46.2
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 6.4e-40 168.7 281 40.9
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 7.8e-38 161.8 309 37.9
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 2.3e-37 160.2 269 38.3
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 5.1e-37 159.1 296 41.2
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 6.6e-37 158.7 310 37.1
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.5e-36 157.5 351 35.0
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.5e-36 157.5 281 38.1
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.8e-34 150.6 247 39.7
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 4.4e-33 146.0 183 48.6
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 7.6e-33 145.2 262 38.2
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.2e-32 143.7 209 45.9
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 4.1e-31 139.4 165 52.1
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.1e-30 137.1 296 34.8
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.5e-28 131.0 306 34.3
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.3e-28 129.8 284 34.9
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.6e-27 126.3 148 48.0
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 8.1e-27 125.2 144 48.6
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 9.0e-26 121.7 320 32.2
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.9e-24 116.7 118 54.2
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 8.4e-24 115.2 83 68.7
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.3e-21 107.8 289 33.6
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.6e-19 100.9 210 36.2
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.8e-19 100.1 210 36.2
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.1e-18 98.2 217 32.7
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 6.9e-18 95.5 129 47.3
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 9.0e-18 95.1 205 33.7
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.5e-17 94.4 261 31.8
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 3.4e-17 93.2 82 58.5
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.1e-15 88.2 212 31.6
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.9e-15 87.4 185 33.5
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 5.4e-15 85.9 83 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.1e-14 84.0 317 28.4
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 5.1e-13 79.3 100 43.0
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.5e-12 77.8 235 31.5
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 7.4e-12 75.5 307 26.7


User provided reference genes

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