Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 1.4e-54 216.1 112 100.0
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.8e-33 146.0 128 60.2
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 2.3e-33 145.6 123 65.9
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 2.3e-33 145.6 126 62.7
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 6.7e-33 144.1 129 58.9
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 2.6e-32 142.1 128 63.3
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 4.4e-32 141.4 129 58.1
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 4.4e-32 141.4 130 61.5
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 5.7e-32 141.0 128 57.8
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 5.7e-32 141.0 96 74.0
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 2.2e-31 139.0 115 65.2
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.8e-31 138.7 98 70.4
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 3.7e-31 138.3 133 57.9
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 6.3e-31 137.5 128 57.8
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 6.3e-31 137.5 133 59.4
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 8.2e-31 137.1 89 76.4
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 1.1e-30 136.7 98 69.4
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 1.1e-30 136.7 89 77.5
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 1.8e-30 136.0 127 59.1
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 1.8e-30 136.0 123 61.0
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 3.1e-30 135.2 123 61.8
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 3.1e-30 135.2 114 65.8
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 4.1e-30 134.8 114 58.8
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 4.1e-30 134.8 115 60.0
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 4.1e-30 134.8 91 76.9
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 6.9e-30 134.0 93 72.0
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 6.9e-30 134.0 90 68.9
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 6.9e-30 134.0 90 68.9
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 9.1e-30 133.7 92 72.8
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 9.1e-30 133.7 92 72.8
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 9.1e-30 133.7 89 73.0
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 9.1e-30 133.7 130 56.9
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 9.1e-30 133.7 76 81.6
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 9.1e-30 133.7 90 74.4
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 1.2e-29 133.3 93 71.0
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 1.2e-29 133.3 122 59.8
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 1.2e-29 133.3 95 68.4
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 1.2e-29 133.3 127 59.1
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 1.2e-29 133.3 90 73.3
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.2e-29 133.3 130 58.5
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 1.5e-29 132.9 127 58.3
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 2.6e-29 132.1 88 67.0
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 2.6e-29 132.1 89 68.5
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 2.6e-29 132.1 89 68.5
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 3.4e-29 131.7 88 69.3
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 3.4e-29 131.7 88 69.3
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 3.4e-29 131.7 89 68.5
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 3.4e-29 131.7 88 69.3
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 3.4e-29 131.7 118 59.3
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 3.4e-29 131.7 89 71.9
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 4.5e-29 131.3 89 68.5
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 4.5e-29 131.3 88 75.0
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 5.9e-29 131.0 83 75.9
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 5.9e-29 131.0 92 69.6
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 5.9e-29 131.0 90 72.2
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 7.7e-29 130.6 86 75.6
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 7.7e-29 130.6 109 65.1
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 1.0e-28 130.2 118 59.3
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 1.0e-28 130.2 99 65.7
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 1.3e-28 129.8 108 63.0
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 1.7e-28 129.4 88 70.5
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 1.7e-28 129.4 124 58.1
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 1.7e-28 129.4 124 58.1
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 1.7e-28 129.4 75 80.0
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 1.7e-28 129.4 111 61.3
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 2.2e-28 129.0 88 67.0
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 2.2e-28 129.0 97 64.9
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 2.9e-28 128.6 72 81.9
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 3.8e-28 128.3 114 57.0
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 3.8e-28 128.3 128 57.0
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 6.5e-28 127.5 119 56.3
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 6.5e-28 127.5 97 64.9
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 8.5e-28 127.1 119 56.3
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 8.5e-28 127.1 87 70.1
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 8.5e-28 127.1 125 60.0
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 1.1e-27 126.7 118 58.5
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 1.1e-27 126.7 86 66.3
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.4e-27 126.3 128 54.7
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 1.9e-27 125.9 118 57.6
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 3.2e-27 125.2 119 55.5
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 3.2e-27 125.2 119 55.5
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 5.5e-27 124.4 77 75.3
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 5.5e-27 124.4 91 68.1
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 1.2e-26 123.2 121 58.7
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 1.2e-26 123.2 73 76.7
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 2.7e-26 122.1 88 65.9
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 6.1e-26 120.9 70 78.6
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 1.4e-25 119.8 105 61.0
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 1.8e-25 119.4 91 65.9
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 6.7e-25 117.5 86 61.6
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.1e-24 116.7 105 63.8
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 1.1e-24 116.7 91 61.5
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 3.7e-23 111.7 98 54.1
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 1.1e-22 110.2 128 51.6
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 8.5e-20 100.5 75 57.3
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 1.5e-19 99.8 105 56.2
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 1.9e-19 99.4 76 53.9
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 1.9e-19 99.4 106 51.9
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 2.5e-19 99.0 94 51.1
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 3.2e-19 98.6 90 63.3
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 9.4e-19 97.1 56 80.4
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 1.2e-18 96.7 113 46.9
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 4.0e-17 91.7 116 37.9
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 1.5e-16 89.7 76 50.0
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 2.2e-15 85.9 64 54.7
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 6.5e-12 74.3 61 63.9
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 2.7e-10 68.9 60 61.7
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 6.1e-10 67.8 37 81.1
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 1.0e-09 67.0 39 71.8
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 3.4e-08 62.0 57 54.4
Gohir.D09G100550 Gossypium hirsutum HOM05D007267 ORTHO05D009053 4.4e-08 61.6 58 53.4
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 7.5e-08 60.8 71 45.1
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 3.7e-07 58.5 32 84.4
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 4.8e-07 58.2 71 46.5
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 6.3e-07 57.8 63 52.4


User provided reference genes

Program Settings