Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 0.0e+00 1671.8 857 100.0
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 7.4e-257 891.0 859 58.8
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 5.0e-213 745.3 882 50.3
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 6.2e-211 738.4 882 50.1
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.2e-209 734.2 882 50.9
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.2e-206 724.2 868 49.5
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.1e-202 711.1 882 49.7
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 8.3e-200 701.4 882 48.9
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.2e-190 671.0 909 46.2
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 7.6e-185 651.7 886 46.3
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 6.0e-182 642.1 878 45.8
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 7.3e-180 635.2 881 47.1
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.6e-179 634.0 875 46.2
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.0e-178 629.4 873 45.7
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 5.3e-178 629.0 861 45.6
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.6e-177 626.7 913 44.6
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.0e-173 613.2 861 45.2
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 5.6e-172 609.0 873 44.4
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 2.1e-171 607.1 874 45.2
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.0e-170 602.8 874 45.0
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.9e-170 602.1 871 44.3
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.9e-168 596.7 882 44.7
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.5e-161 574.3 804 46.0
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 2.6e-161 573.5 859 42.1
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.9e-156 557.4 770 45.1
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 9.0e-154 548.5 861 43.2
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 5.5e-151 539.3 863 41.8
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 2.3e-149 533.9 861 42.4
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 5.0e-144 516.2 997 38.4
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 7.9e-142 508.8 863 40.9
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 1.0e-141 508.4 899 38.9
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.0e-140 504.2 863 40.0
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 7.4e-140 502.3 878 39.7
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.5e-137 494.6 863 39.5
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 7.7e-137 492.3 857 40.1
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 2.2e-136 490.7 616 48.2
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.9e-136 490.3 878 39.9
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 2.1e-134 484.2 887 38.6
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 8.8e-133 478.8 858 39.9
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 6.3e-131 472.6 884 37.8
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 1.2e-129 468.4 888 38.6
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 2.2e-128 464.2 888 37.4
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 9.8e-124 448.7 880 37.8
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.0e-120 438.7 809 37.7
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 4.2e-119 433.3 861 37.5
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 3.6e-118 430.3 811 37.5
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 6.8e-117 426.0 808 37.6
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.4e-114 418.3 878 36.4
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.8e-114 417.9 822 38.0
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.2e-113 415.2 800 36.8
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.7e-112 411.4 791 37.3
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 2.3e-112 411.0 876 36.4
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 9.8e-108 395.6 806 36.6
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-106 392.1 886 34.3
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 5.4e-106 389.8 841 34.5
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.2e-105 388.7 828 35.9
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.2e-105 388.7 820 36.7
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.0e-104 385.6 863 35.1
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.7e-104 384.8 856 34.1
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 8.6e-104 382.5 862 36.0
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 5.6e-103 379.8 879 34.6
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.0e-101 375.6 830 35.1
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 1.4e-101 375.2 876 34.7
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 9.8e-100 369.0 868 33.5
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.7e-99 368.2 770 35.7
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 4.9e-99 366.7 814 35.4
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 4.1e-98 363.6 869 32.9
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 6.0e-97 359.8 834 35.9
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.0e-96 359.0 744 36.7
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 3.9e-96 357.1 802 34.5
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 1.3e-91 342.0 861 33.9
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 6.0e-89 333.2 864 33.3
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 6.6e-88 329.7 860 33.1
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.5e-87 328.6 864 33.3
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 1.9e-87 328.2 686 36.6
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 8.1e-86 322.8 859 33.2
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 5.2e-85 320.1 850 31.6
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 6.8e-85 319.7 860 32.6
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 8.9e-85 319.3 861 32.1
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 1.1e-82 312.4 788 34.6
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 3.5e-81 307.4 858 31.7
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.3e-80 305.4 858 32.5
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 3.0e-80 304.3 866 30.3
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 3.9e-80 303.9 859 32.5
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 8.6e-80 302.8 857 32.2
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 2.5e-79 301.2 857 32.1
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 5.6e-79 300.1 693 31.7
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 1.2e-78 298.9 867 31.6
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 3.6e-78 297.4 745 32.3
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.1e-77 295.8 786 31.4
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.2e-76 292.4 827 31.1
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 3.4e-76 290.8 866 31.1
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 9.9e-76 289.3 850 29.2
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 4.9e-75 287.0 727 33.0
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 9.3e-74 282.7 851 29.3
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 2.7e-73 281.2 682 32.0
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 6.0e-73 280.0 733 33.2
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.3e-72 278.9 860 29.8
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 2.5e-71 274.6 821 29.6
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.8e-69 268.5 830 28.9
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.4e-68 263.8 413 40.9
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.4e-68 263.8 413 40.9
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.8e-67 260.8 413 40.7
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 9.3e-66 256.1 869 28.4
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.6e-65 255.4 685 30.8
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 1.9e-63 248.4 864 28.1
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 9.3e-58 229.6 237 54.9
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 3.4e-52 211.1 457 33.0
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 4.2e-50 204.1 507 35.9
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 9.3e-50 203.0 505 33.3
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.1e-47 196.1 604 29.5
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 1.5e-39 169.1 454 30.2
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 3.1e-37 161.4 166 51.8
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 3.1e-37 161.4 487 29.0
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 8.5e-35 153.3 286 36.0
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.4e-34 152.5 319 35.4
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 7.2e-34 150.2 320 35.0
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.4e-32 146.0 378 29.9
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 2.3e-32 145.2 320 34.1
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 1.1e-29 136.3 290 33.1
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 3.4e-28 131.3 386 29.5
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 7.4e-23 113.6 411 26.8
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.3e-22 112.8 291 30.2
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 2.8e-22 111.7 136 45.6
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 7.0e-21 107.1 143 40.6
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.0e-20 105.5 118 51.7
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.9e-18 99.0 238 32.8
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 2.7e-17 95.1 355 28.5
Aqoxy7G00167 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.7e-09 68.6 99 41.4
Aqoxy7G00171 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.7e-09 68.6 99 41.4
Aqoxy88s005 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.7e-09 68.6 99 41.4
Aqoxy2G01760 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 8.8e-08 63.5 88 39.8
SMO228G0186 Selaginella moellendorffii HOM05D019256 ORTHO05D023510 8.8e-08 63.5 353 23.2
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 2.0e-07 62.4 199 32.7


User provided reference genes

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