Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 4.3e-223 777.7 402 100.0
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 5.2e-51 206.1 447 40.3
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 1.1e-45 188.3 415 38.8
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 1.1e-40 171.8 399 37.8
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 3.5e-39 166.8 432 35.9
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 1.0e-38 165.2 396 35.1
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 1.5e-37 161.4 391 36.8
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 1.5e-37 161.4 404 36.9
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.9e-37 161.0 405 37.3
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 3.2e-37 160.2 425 34.4
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 3.2e-37 160.2 422 36.3
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 5.5e-37 159.5 414 35.7
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.6e-36 157.9 404 36.4
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 3.6e-36 156.8 424 36.3
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 1.4e-35 154.8 377 38.5
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 4.9e-33 146.4 399 33.1
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 1.1e-32 145.2 387 35.4
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 2.4e-32 144.1 402 33.6
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 5.9e-31 139.4 406 32.0
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 3.8e-30 136.7 383 31.9
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 3.8e-30 136.7 448 33.7
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 6.6e-30 136.0 428 32.5
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 6.6e-30 136.0 395 33.9
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 2.1e-28 131.0 412 33.3
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 1.4e-27 128.3 332 37.0
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 1.2e-26 125.2 306 38.9
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 3.4e-26 123.6 395 31.4
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 3.4e-26 123.6 309 36.6
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 2.2e-25 120.9 201 40.8
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 4.9e-25 119.8 402 32.8
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 6.4e-25 119.4 314 35.7
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 5.4e-24 116.3 288 37.8
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 7.0e-24 115.9 329 34.7
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 1.6e-23 114.8 397 32.7
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 1.6e-23 114.8 384 31.8
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 3.0e-22 110.5 110 57.3
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 8.6e-22 109.0 215 39.5
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.5e-21 107.5 392 32.4
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 3.3e-21 107.1 283 38.2
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 4.3e-21 106.7 194 42.3
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 9.5e-21 105.5 305 32.5
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 2.8e-20 104.0 190 42.1
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 3.6e-20 103.6 392 31.9
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 4.7e-20 103.2 214 40.2
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 8.0e-20 102.4 244 36.5
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 8.0e-20 102.4 397 30.0
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 8.0e-20 102.4 263 36.5
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 8.0e-20 102.4 375 31.2
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 1.8e-19 101.3 404 30.0
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 2.3e-19 100.9 391 30.7
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 2.6e-18 97.4 130 48.5
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 4.4e-18 96.7 390 32.1
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 5.8e-18 96.3 418 28.5
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 9.8e-18 95.5 164 43.3
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 1.3e-17 95.1 298 31.5
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 1.4e-16 91.7 321 34.0
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 2.4e-16 90.9 252 32.1
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 3.2e-16 90.5 324 31.2
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 3.2e-16 90.5 241 34.4
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 5.4e-16 89.7 91 57.1
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 4.6e-15 86.7 260 34.2
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 4.6e-15 86.7 381 28.9
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 6.0e-15 86.3 302 32.8
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 7.8e-15 85.9 389 27.5
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.0e-14 85.5 321 31.2
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 1.7e-14 84.7 295 32.5
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 5.0e-14 83.2 311 31.5
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 2.5e-13 80.9 375 28.5
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 2.8e-12 77.4 387 27.6
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 1.8e-11 74.7 395 27.6
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 1.8e-11 74.7 193 35.2
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 3.1e-11 73.9 399 28.6
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 3.1e-11 73.9 380 27.4
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 6.8e-11 72.8 163 36.2
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 1.2e-10 72.0 388 27.1
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 3.4e-10 70.5 142 37.3
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 3.7e-09 67.0 161 32.3
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 8.3e-09 65.9 307 27.4
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 1.9e-08 64.7 149 33.6
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 1.9e-08 64.7 107 37.4
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 4.1e-08 63.5 181 33.1
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 7.1e-08 62.8 397 25.4
Dinv41084 Davidia involucrata HOM05D002733 ORTHO05D010023 9.2e-08 62.4 110 40.9
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 1.2e-07 62.0 91 42.9
PSO541G1997 Papaver somniferum HOM05D001841 ORTHO05D001767 1.3e-06 58.5 226 30.5
Migut.B00315 Erythranthe guttata HOM05D001841 ORTHO05D001767 1.7e-06 58.2 103 35.9
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 2.3e-06 57.8 200 30.0
Cc02_g18570 Coffea canephora HOM05D001841 ORTHO05D001767 2.3e-06 57.8 154 33.1
Sc08g0000020 Simmondsia chinensis HOM05D001841 ORTHO05D001767 3.9e-06 57.0 266 25.2


User provided reference genes

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