Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 3.0e-112 408.7 230 100.0
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 3.6e-97 358.6 225 86.7
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 1.8e-96 356.3 230 90.9
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 8.5e-91 337.4 227 82.8
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 5.5e-90 334.7 228 77.6
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 5.5e-90 334.7 228 77.6
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 9.4e-90 334.0 228 82.0
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 1.6e-89 333.2 228 82.9
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 2.1e-89 332.8 225 84.0
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 3.6e-89 332.0 230 80.0
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 8.0e-89 330.9 225 83.1
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 2.3e-88 329.3 227 80.2
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 3.0e-88 328.9 228 80.3
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 5.2e-88 328.2 227 81.1
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 6.7e-88 327.8 225 82.7
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 8.8e-88 327.4 225 82.7
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 2.0e-87 326.2 225 82.2
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 2.0e-87 326.2 227 81.5
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 2.0e-87 326.2 227 80.2
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 2.6e-87 325.9 225 81.8
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.6e-87 325.9 230 79.6
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 5.7e-87 324.7 227 81.1
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 5.7e-87 324.7 227 80.2
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 1.3e-86 323.6 230 77.4
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 1.7e-86 323.2 225 82.2
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 1.7e-86 323.2 230 77.4
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 4.8e-86 321.6 227 79.7
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.1e-85 320.5 227 80.6
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 4.1e-85 318.5 228 71.1
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 4.1e-85 318.5 210 83.8
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 4.1e-85 318.5 226 70.8
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 9.1e-85 317.4 220 70.9
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 7.7e-84 314.3 225 76.4
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 2.2e-83 312.8 230 73.9
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 2.5e-82 309.3 221 68.8
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 4.2e-82 308.5 225 75.6
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 1.2e-81 307.0 223 68.6
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 1.6e-81 306.6 207 82.6
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 1.6e-81 306.6 212 79.7
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 2.1e-81 306.2 228 75.9
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 2.1e-81 306.2 218 77.5
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 6.1e-81 304.7 227 68.7
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 1.0e-80 303.9 212 79.7
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 1.4e-80 303.5 226 66.4
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 1.4e-80 303.5 209 69.9
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 2.3e-80 302.8 214 77.6
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 4.0e-80 302.0 214 77.1
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 4.0e-80 302.0 214 77.1
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 1.2e-79 300.4 226 74.8
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 1.2e-79 300.4 224 67.4
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 1.2e-79 300.4 234 74.8
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 2.6e-79 299.3 215 79.1
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 9.7e-79 297.4 224 66.5
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 9.7e-79 297.4 267 58.8
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 2.2e-78 296.2 227 65.2
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 3.7e-78 295.4 207 81.2
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 4.8e-78 295.0 218 75.2
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 4.8e-78 295.0 227 64.8
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 4.8e-78 295.0 207 72.0
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 4.8e-78 295.0 207 72.0
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 6.3e-78 294.7 217 73.7
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 8.2e-78 294.3 207 79.2
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 1.8e-77 293.1 228 72.4
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 1.8e-77 293.1 226 65.5
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 2.4e-77 292.7 225 64.0
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 4.1e-77 292.0 223 73.5
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 5.3e-77 291.6 229 69.4
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 5.3e-77 291.6 214 77.1
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 7.0e-77 291.2 215 75.8
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 7.0e-77 291.2 205 79.5
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 7.0e-77 291.2 218 74.8
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 9.1e-77 290.8 215 75.8
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 9.1e-77 290.8 215 75.3
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 1.2e-76 290.4 215 75.8
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 1.2e-76 290.4 215 76.3
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 1.6e-76 290.0 215 70.7
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 1.6e-76 290.0 215 74.9
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 1.6e-76 290.0 215 74.9
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 1.6e-76 290.0 215 74.9
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 1.6e-76 290.0 214 74.8
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 1.6e-76 290.0 207 78.7
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 2.0e-76 289.7 170 80.0
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 3.5e-76 288.9 212 76.9
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 3.5e-76 288.9 215 74.0
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 3.5e-76 288.9 208 76.9
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 5.9e-76 288.1 215 74.4
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 5.9e-76 288.1 211 73.0
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 1.0e-75 287.3 215 75.3
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 1.7e-75 286.6 220 70.5
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 1.7e-75 286.6 226 70.8
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 6.5e-75 284.6 214 74.3
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 2.5e-74 282.7 198 80.8
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 7.2e-74 281.2 216 74.1
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 3.6e-73 278.9 207 77.3
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 4.7e-73 278.5 227 70.0
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 1.8e-72 276.6 220 64.1
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 3.0e-72 275.8 207 76.8
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 5.2e-72 275.0 210 74.3
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 1.2e-71 273.9 170 74.7
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 1.2e-71 273.9 210 63.8
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 2.6e-71 272.7 207 76.3
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 9.8e-71 270.8 212 63.7
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 2.2e-70 269.6 210 72.4
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 3.1e-69 265.8 215 70.7
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 1.4e-64 250.4 217 63.6
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 2.0e-63 246.5 216 60.6
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 4.9e-62 241.9 220 55.9
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 8.3e-62 241.1 223 55.6
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 2.0e-60 236.5 195 63.1
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 1.3e-54 217.2 215 63.7
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 1.9e-50 203.4 228 59.2
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 2.8e-49 199.5 202 58.9
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 2.0e-47 193.4 165 57.0
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 4.6e-44 182.2 202 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 7.3e-42 174.9 214 51.9
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 1.2e-41 174.1 139 61.9
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 3.9e-35 152.5 99 75.8
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 8.6e-35 151.4 209 49.3
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 1.2e-20 104.4 102 70.6
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 7.3e-18 95.1 78 61.5
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 3.5e-12 76.3 46 71.7
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 7.4e-10 68.6 100 43.0
RcHm_v2.0_Chr3g0487451 Rosa chinensis HOM05D032618 ORTHO05D007999 2.0e-07 60.5 52 55.8
FAN23G0561 Fragaria x ananassa HOM05D000710 ORTHO05D000336 1.3e-06 57.8 164 28.0
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 1.7e-06 57.4 71 33.8
Sc03g0001840 Simmondsia chinensis HOM05D001905 ORTHO05D001820 2.2e-06 57.0 158 28.5
RcHm_v2.0_Chr5g0029101 Rosa chinensis HOM05D032618 ORTHO05D007999 8.4e-06 55.1 51 52.9


User provided reference genes

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