Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 6.4e-51 203.8 101 100.0
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 4.2e-34 147.9 84 86.9
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 7.2e-34 147.1 82 85.4
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 9.3e-34 146.7 83 84.3
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.2e-33 146.4 84 81.0
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.2e-33 146.4 84 81.0
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 1.2e-33 146.4 84 82.1
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.2e-33 146.4 84 81.0
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 1.2e-33 146.4 84 85.7
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 1.6e-33 146.0 84 79.8
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 2.1e-33 145.6 84 85.7
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 2.7e-33 145.2 84 85.7
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 2.7e-33 145.2 84 85.7
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 3.5e-33 144.8 84 82.1
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 3.5e-33 144.8 84 82.1
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 6.1e-33 144.1 84 83.3
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.1e-33 144.1 84 84.5
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 6.1e-33 144.1 82 84.1
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 7.9e-33 143.7 84 83.3
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 7.9e-33 143.7 84 83.3
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 7.9e-33 143.7 84 83.3
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 7.9e-33 143.7 84 83.3
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 7.9e-33 143.7 84 83.3
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.0e-32 143.3 84 83.3
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.0e-32 143.3 84 83.3
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 1.0e-32 143.3 84 83.3
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.3e-32 142.9 84 84.5
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.3e-32 142.9 84 83.3
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 1.8e-32 142.5 83 83.1
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 2.3e-32 142.1 84 82.1
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 2.3e-32 142.1 84 82.1
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 2.3e-32 142.1 84 82.1
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 3.0e-32 141.7 84 82.1
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 3.0e-32 141.7 84 78.6
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 5.1e-32 141.0 84 79.8
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 5.1e-32 141.0 84 81.0
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 5.1e-32 141.0 84 81.0
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 6.7e-32 140.6 84 77.4
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 6.7e-32 140.6 84 77.4
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 6.7e-32 140.6 84 81.0
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 8.7e-32 140.2 82 81.7
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 8.7e-32 140.2 84 79.8
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.5e-31 139.4 84 77.4
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.5e-31 139.4 84 78.6
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.9e-31 139.0 84 79.8
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 2.5e-31 138.7 83 80.7
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.5e-31 138.7 84 81.0
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 3.3e-31 138.3 84 77.4
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 3.3e-31 138.3 84 82.1
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 4.3e-31 137.9 84 77.4
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 4.3e-31 137.9 84 79.8
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 5.7e-31 137.5 84 76.2
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 5.7e-31 137.5 83 78.3
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 5.7e-31 137.5 84 77.4
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 5.7e-31 137.5 84 77.4
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 7.4e-31 137.1 82 74.4
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 7.4e-31 137.1 84 76.2
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 7.4e-31 137.1 84 79.8
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 7.4e-31 137.1 84 82.1
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 7.4e-31 137.1 82 78.0
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 9.7e-31 136.7 84 77.4
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 9.7e-31 136.7 81 79.0
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 9.7e-31 136.7 82 76.8
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.3e-30 136.3 82 75.6
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.3e-30 136.3 82 75.6
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.6e-30 136.0 82 78.0
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.6e-30 136.0 82 80.5
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.6e-30 136.0 82 80.5
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.2e-30 135.6 84 76.2
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 2.8e-30 135.2 84 73.8
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 2.8e-30 135.2 84 78.6
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 3.7e-30 134.8 84 75.0
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 3.7e-30 134.8 84 75.0
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 6.3e-30 134.0 84 75.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 6.3e-30 134.0 84 73.8
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 6.3e-30 134.0 82 79.3
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 6.3e-30 134.0 84 78.6
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 6.3e-30 134.0 84 73.8
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.1e-29 133.3 84 76.2
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.1e-29 133.3 84 76.2
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.1e-29 133.3 84 76.2
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.1e-29 133.3 84 76.2
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.1e-29 133.3 84 78.6
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.4e-29 132.9 84 75.0
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.4e-29 132.9 84 78.6
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 1.8e-29 132.5 84 75.0
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 1.8e-29 132.5 82 73.2
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 1.8e-29 132.5 84 76.2
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 2.4e-29 132.1 84 75.0
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 6.9e-29 130.6 84 72.6
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 6.9e-29 130.6 82 72.0
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 6.9e-29 130.6 82 72.0
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 6.9e-29 130.6 82 73.2
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 1.5e-28 129.4 84 72.6
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 2.0e-28 129.0 95 66.3
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 2.0e-28 129.0 82 72.0
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 2.6e-28 128.6 84 73.8
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 4.5e-28 127.9 82 75.6
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 4.5e-28 127.9 84 73.8
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 5.9e-28 127.5 84 70.2
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.3e-27 126.3 83 72.3
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 2.2e-27 125.6 84 70.2
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 2.9e-27 125.2 83 71.1
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 1.1e-26 123.2 73 79.5
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 2.5e-26 122.1 84 66.7
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 3.2e-26 121.7 84 69.0
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 2.1e-25 119.0 83 67.5
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 3.6e-25 118.2 84 64.3
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 1.8e-24 115.9 94 61.7
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.5e-23 112.8 94 59.6
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.5e-23 112.1 84 65.5
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 2.5e-23 112.1 84 65.5
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 5.7e-23 110.9 82 63.4
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 1.7e-22 109.4 84 65.5
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 6.9e-21 104.0 81 60.5
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 5.9e-20 100.9 82 61.0
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 9.4e-18 93.6 84 57.1
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.4e-16 89.7 83 54.2
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 3.0e-16 88.6 102 46.1
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 3.9e-16 88.2 98 41.8
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 8.8e-16 87.0 83 54.2
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.8e-13 79.3 42 90.5
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 5.3e-13 77.8 90 45.6
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 9.1e-13 77.0 84 45.2
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.3e-11 73.2 79 44.3
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 3.8e-11 71.6 47 76.6
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.5e-10 69.7 42 81.0
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 8.8e-08 60.5 129 34.9
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 1.3e-06 56.6 35 71.4
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 1.3e-06 56.6 35 71.4


User provided reference genes

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