Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 7.3e-144 513.8 252 100.0
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.3e-113 413.3 246 83.7
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.6e-111 406.4 221 90.0
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 6.2e-103 377.9 241 77.2
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 7.1e-99 364.4 239 76.2
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.3e-97 360.1 245 75.1
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 4.3e-96 355.1 242 73.1
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 9.0e-94 347.4 247 73.3
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 2.0e-93 346.3 241 73.4
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 7.6e-93 344.4 243 72.0
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 3.8e-92 342.0 243 69.5
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 4.9e-92 341.7 242 71.9
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 6.7e-89 331.3 245 68.2
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 6.7e-89 331.3 250 69.2
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.5e-88 330.1 243 69.1
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.5e-88 330.1 246 66.7
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.3e-88 328.6 245 68.6
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 7.4e-88 327.8 244 68.4
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.6e-87 326.6 243 70.0
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 4.0e-86 322.0 244 68.9
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 6.9e-86 321.2 250 69.6
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 9.0e-86 320.9 259 63.3
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.5e-85 320.1 236 68.2
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.4e-85 318.9 243 66.3
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 4.5e-85 318.5 252 64.7
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 7.6e-85 317.8 244 68.0
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 6.5e-84 314.7 256 64.8
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.1e-83 313.9 244 67.2
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.5e-83 312.8 243 67.1
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 4.2e-83 312.0 248 67.7
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 7.1e-83 311.2 247 65.6
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 1.2e-82 310.5 246 64.6
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 2.1e-82 309.7 228 69.3
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.5e-82 308.9 244 66.8
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.6e-82 308.5 240 66.7
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 4.6e-82 308.5 244 66.4
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.9e-82 307.8 217 71.4
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.0e-81 307.4 240 66.7
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.8e-81 306.6 240 66.2
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 3.0e-81 305.8 232 66.4
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 3.0e-81 305.8 236 69.1
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.9e-81 305.4 228 68.4
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 6.7e-81 304.7 244 63.5
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.9e-80 303.1 228 68.0
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 4.3e-80 302.0 254 66.1
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.4e-78 297.0 241 63.1
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.8e-78 296.6 240 64.6
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 3.1e-78 295.8 244 63.1
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 5.3e-78 295.0 269 58.0
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 9.0e-78 294.3 251 64.5
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.7e-76 290.0 247 64.0
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.9e-76 289.3 247 64.0
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.1e-75 287.3 252 61.9
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.2e-75 285.8 215 68.4
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 4.2e-75 285.4 207 69.1
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.2e-74 283.9 247 63.2
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.6e-74 283.5 193 74.1
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.6e-74 283.5 214 66.8
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.6e-74 282.3 240 60.8
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.6e-74 282.0 254 61.0
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 6.1e-74 281.6 240 60.8
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 7.9e-74 281.2 237 62.9
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.3e-73 279.6 254 62.6
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.0e-73 279.3 276 55.4
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 8.8e-73 277.7 205 70.7
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.1e-72 277.3 217 66.4
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.1e-72 277.3 270 58.1
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.5e-72 276.9 174 78.7
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 2.0e-72 276.6 269 57.2
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.0e-72 276.6 216 65.7
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.5e-72 276.2 263 59.3
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.5e-72 276.2 198 71.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 5.7e-72 275.0 239 61.1
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.3e-71 273.9 254 61.0
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.7e-71 273.5 249 58.6
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 2.8e-71 272.7 257 59.5
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 8.2e-71 271.2 235 63.4
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.1e-70 270.8 299 53.8
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.4e-70 270.4 174 77.6
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.4e-70 269.6 215 65.6
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 3.1e-70 269.2 210 67.6
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 5.3e-70 268.5 231 64.1
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.0e-69 266.5 251 58.6
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.6e-69 266.2 223 64.1
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 3.8e-68 262.3 245 59.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 3.8e-68 262.3 245 59.2
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 9.4e-67 257.7 251 54.6
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.2e-66 257.3 218 63.3
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 6.1e-66 255.0 240 59.6
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.8e-65 253.4 260 54.6
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.8e-65 253.4 260 54.6
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 3.0e-65 252.7 260 54.6
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 3.9e-65 252.3 257 54.5
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 3.9e-65 252.3 175 73.7
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 6.7e-65 251.5 260 54.2
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 2.0e-64 250.0 283 51.6
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.0e-64 250.0 201 65.2
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.6e-64 249.6 240 58.3
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 7.4e-64 248.1 174 74.1
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 9.7e-64 247.7 203 64.5
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.7e-63 246.9 232 58.2
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 4.8e-63 245.4 241 57.7
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 6.3e-63 245.0 224 58.0
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 8.2e-63 244.6 222 59.9
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 2.6e-61 239.6 202 60.4
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 2.6e-61 239.6 249 56.2
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 1.0e-60 237.7 246 53.7
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 2.9e-60 236.1 243 53.1
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 4.2e-59 232.3 194 59.3
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 9.4e-59 231.1 263 51.3
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 3.6e-58 229.2 250 51.2
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 6.1e-58 228.4 222 57.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.0e-57 227.6 259 48.6
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.4e-57 227.3 263 52.1
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.3e-57 226.5 249 53.0
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 8.8e-57 224.6 228 57.0
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.5e-56 223.8 264 50.4
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.5e-56 223.8 254 51.6
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.0e-56 223.4 259 50.2
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 7.4e-56 221.5 255 51.8
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.7e-55 220.3 248 50.4
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.7e-55 220.3 231 54.1
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.3e-52 210.7 177 64.4
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.9e-51 206.8 189 53.4
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.2e-51 206.1 196 59.7
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.6e-50 202.6 172 59.3
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 5.2e-49 198.7 177 59.9
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.5e-48 197.2 232 50.0
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.7e-47 192.6 197 56.3
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 4.1e-46 189.1 162 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 9.1e-46 188.0 140 64.3
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 9.1e-46 188.0 260 44.2
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.1e-46 188.0 136 73.5
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 7.7e-45 184.9 136 73.5
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 7.2e-43 178.3 183 51.9
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 8.0e-42 174.9 114 66.7
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.7e-39 167.2 174 52.9
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.7e-39 166.0 131 66.4
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 3.1e-38 162.9 200 47.5
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 7.0e-38 161.8 138 66.7
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 2.3e-36 156.8 161 55.9
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 2.1e-34 150.2 146 63.0
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 4.7e-34 149.1 107 66.4
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 4.7e-34 149.1 153 57.5
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 8.0e-34 148.3 130 67.7
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.2e-32 144.4 137 64.2
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.9e-31 139.0 101 64.4
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 1.1e-30 137.9 250 40.0
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.4e-30 137.5 122 57.4
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 3.2e-30 136.3 164 47.6
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.6e-29 134.0 155 47.7
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.3e-25 120.2 148 53.4
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 2.6e-24 116.7 245 37.6
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 4.9e-23 112.5 159 39.6
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 1.2e-21 107.8 133 51.1
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 2.7e-21 106.7 97 66.0
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.0e-20 104.8 67 70.1
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.9e-19 100.5 96 60.4
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 3.3e-19 99.8 103 44.7
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 4.3e-19 99.4 68 67.6
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.2e-18 97.8 120 39.2
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.6e-18 97.4 101 54.5
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.0e-16 90.5 79 57.0
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.7e-15 87.4 108 53.7
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 4.1e-14 82.8 119 39.5
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.4e-14 82.4 69 58.0
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 5.4e-14 82.4 68 60.3
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 5.6e-11 72.4 48 66.7
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.8e-10 70.1 80 40.0
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 5.8e-08 62.4 50 56.0
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 3.7e-07 59.7 52 67.3
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 3.7e-07 59.7 52 67.3
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 6.4e-07 58.9 90 41.1
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 2.4e-06 57.0 62 41.9
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 2.4e-06 57.0 47 46.8
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 3.2e-06 56.6 100 38.0


User provided reference genes

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