Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 4.7e-123 444.5 218 100.0
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 5.6e-100 367.9 226 80.1
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 2.3e-98 362.5 227 81.1
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 7.5e-97 357.5 226 77.9
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.7e-96 356.3 226 78.8
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.2e-96 355.9 226 78.8
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 9.2e-95 350.5 229 76.0
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 3.5e-94 348.6 229 76.9
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.0e-93 347.1 226 77.0
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.0e-93 347.1 226 77.0
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.7e-93 346.3 226 77.9
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.0e-93 345.5 226 77.0
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 5.0e-93 344.7 226 77.0
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 6.6e-93 344.4 226 77.0
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 6.6e-93 344.4 224 77.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.1e-92 343.6 224 77.7
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.9e-92 342.8 225 75.6
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 4.3e-92 341.7 227 76.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 7.3e-92 340.9 229 76.4
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.1e-90 337.0 226 75.2
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 6.8e-90 334.3 226 74.3
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.9e-90 334.0 228 73.2
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 8.9e-90 334.0 228 73.2
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.2e-89 333.6 226 75.7
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.2e-89 333.6 226 75.2
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.6e-89 332.4 228 72.8
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.2e-88 329.3 225 72.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.2e-88 329.3 225 72.4
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.4e-88 327.8 225 72.0
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 6.4e-88 327.8 221 73.3
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.1e-87 327.0 225 72.0
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.1e-87 327.0 226 75.2
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.1e-87 327.0 225 72.9
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.1e-87 325.1 225 71.6
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 5.4e-87 324.7 227 71.4
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 7.1e-87 324.3 222 73.0
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.6e-86 323.2 223 73.1
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.5e-86 322.0 222 73.4
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.0e-85 318.9 222 73.4
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 3.0e-85 318.9 227 70.5
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 5.1e-85 318.2 236 71.6
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 6.6e-85 317.8 231 69.7
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 6.6e-85 317.8 224 72.8
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.6e-84 314.7 222 73.0
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 7.3e-84 314.3 227 70.5
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 7.3e-84 314.3 224 69.2
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.2e-83 313.5 222 71.6
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.1e-83 312.8 218 72.0
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.8e-83 312.4 224 69.6
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.7e-83 311.6 222 71.2
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 2.3e-82 309.3 225 68.0
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.0e-82 308.5 222 71.2
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 5.2e-82 308.1 228 68.0
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 6.8e-82 307.8 226 69.0
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.2e-80 302.8 238 66.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.2e-80 302.8 218 71.1
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.9e-80 302.4 224 67.9
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 6.4e-80 301.2 222 71.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.1e-79 300.4 228 67.5
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.9e-79 299.7 222 70.3
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.9e-79 299.7 217 68.2
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.9e-79 299.7 225 66.7
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 3.2e-79 298.9 223 69.5
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 4.1e-79 298.5 225 66.2
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.6e-78 296.6 221 69.7
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 7.8e-78 294.3 224 65.6
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.7e-77 293.1 232 65.5
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.9e-76 289.7 218 69.3
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 2.5e-76 289.3 221 64.3
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.5e-76 289.3 228 63.2
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 3.6e-75 285.4 221 66.5
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.6e-75 285.4 168 79.2
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 8.1e-75 284.3 218 64.2
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.1e-74 283.9 221 63.3
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.4e-74 283.5 218 67.4
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.4e-74 283.5 225 65.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.8e-74 283.1 223 64.6
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 3.1e-74 282.3 223 65.0
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.0e-74 282.0 226 64.6
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 6.9e-74 281.2 216 67.6
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 8.9e-74 280.8 227 63.0
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.5e-73 280.0 221 62.0
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.5e-73 280.0 216 67.1
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 4.4e-73 278.5 220 63.6
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.4e-73 278.5 188 76.1
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.8e-73 278.1 227 67.4
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.4e-71 272.7 215 62.3
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.1e-70 269.6 227 59.9
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.1e-70 269.6 215 60.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.3e-69 266.2 226 62.4
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 3.0e-69 265.8 216 63.4
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 3.9e-69 265.4 224 61.2
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.9e-69 265.4 216 63.4
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 6.6e-69 264.6 213 64.8
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.9e-68 263.1 227 58.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.5e-68 262.7 217 59.9
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.5e-68 262.7 226 61.5
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 5.6e-68 261.5 243 58.0
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 7.3e-68 261.2 219 61.6
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 9.6e-68 260.8 249 58.2
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.3e-67 260.4 210 64.8
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.6e-67 260.0 221 64.3
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.1e-67 259.6 219 61.2
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.1e-67 259.6 219 60.7
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.1e-67 259.6 219 61.2
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.8e-67 259.2 219 63.0
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.8e-67 259.2 219 63.0
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.6e-67 258.8 215 61.9
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 4.8e-67 258.5 220 62.7
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.8e-67 258.5 219 60.3
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 8.1e-67 257.7 228 59.6
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.4e-66 256.9 219 62.6
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.8e-66 256.5 215 61.4
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 4.0e-66 255.4 218 60.1
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 4.0e-66 255.4 218 61.0
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 6.9e-66 254.6 222 61.3
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 6.9e-66 254.6 211 60.7
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.0e-65 253.1 226 61.1
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.6e-65 252.7 227 62.1
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 9.9e-65 250.8 223 59.2
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 9.9e-65 250.8 221 59.7
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.7e-64 250.0 233 57.1
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.9e-64 248.4 148 77.0
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.4e-63 246.9 229 58.1
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 3.2e-63 245.7 216 58.3
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 9.3e-63 244.2 199 62.3
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 2.7e-62 242.7 229 56.8
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 3.5e-62 242.3 240 55.4
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 3.5e-62 242.3 221 59.7
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.3e-60 235.7 225 57.8
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 4.3e-60 235.3 221 55.7
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.8e-58 229.9 221 55.7
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 3.1e-58 229.2 197 56.9
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.5e-57 226.9 184 64.1
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 9.9e-57 224.2 209 53.6
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 9.9e-57 224.2 155 68.4
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.9e-56 222.6 216 53.2
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.4e-56 221.5 216 52.3
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.1e-55 220.7 212 55.2
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.4e-55 219.5 208 52.9
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 3.2e-55 219.2 213 52.1
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 7.1e-55 218.0 159 64.2
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 9.3e-55 217.6 217 52.5
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.2e-54 217.2 203 55.2
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.1e-54 216.5 202 53.5
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.5e-54 215.7 218 51.4
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.5e-54 215.7 222 51.4
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.9e-52 209.9 216 50.0
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 4.3e-52 208.8 235 50.2
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 9.6e-52 207.6 219 54.3
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.6e-51 206.8 225 52.0
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.8e-51 206.1 220 51.8
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 6.2e-51 204.9 146 63.7
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.4e-50 203.8 221 48.9
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 6.9e-50 201.4 161 62.7
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 5.8e-49 198.4 183 54.6
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.2e-48 196.4 160 56.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 8.4e-48 194.5 221 49.8
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 2.5e-47 193.0 219 51.6
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.5e-47 191.8 160 56.2
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.3e-45 187.2 191 49.7
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.9e-45 185.7 220 45.0
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 4.3e-44 182.2 123 68.3
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 7.4e-44 181.4 208 50.0
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.7e-43 179.1 273 42.1
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.4e-42 176.4 156 54.5
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.4e-42 176.4 158 62.0
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.5e-41 173.7 224 46.9
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.5e-41 173.7 224 46.9
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 5.9e-41 171.8 143 59.4
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 4.2e-39 165.6 223 45.7
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 4.6e-38 162.2 200 42.5
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 6.1e-38 161.8 106 64.2
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.7e-37 158.3 82 87.8
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.1e-29 132.1 88 69.3
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.9e-24 116.3 114 57.0
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 3.6e-22 109.4 63 76.2
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.8e-18 97.1 54 77.8
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 3.8e-16 89.4 52 75.0
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 2.7e-06 56.6 127 35.4


User provided reference genes

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