Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 3.0e-88 328.6 176 100.0
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 4.6e-28 128.6 175 50.9
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 1.2e-25 120.6 144 52.1
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 1.4e-24 117.1 171 45.6
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 9.9e-23 110.9 144 49.3
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 2.2e-22 109.8 159 47.2
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 2.9e-22 109.4 175 46.3
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 1.9e-21 106.7 119 52.1
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 2.4e-21 106.3 137 47.4
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 3.2e-21 105.9 154 44.8
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 5.4e-21 105.1 119 51.3
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 2.1e-20 103.2 173 41.0
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 6.0e-20 101.7 170 42.9
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 6.0e-20 101.7 164 41.5
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 1.0e-19 100.9 149 48.3
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 1.7e-19 100.1 143 48.3
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 2.3e-19 99.8 149 43.6
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 3.0e-19 99.4 171 43.3
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 5.1e-19 98.6 147 46.3
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 6.6e-19 98.2 152 47.4
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 2.5e-18 96.3 153 44.4
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 3.3e-18 95.9 165 42.4
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 3.3e-18 95.9 171 43.3
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 3.3e-18 95.9 135 45.9
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 7.3e-18 94.7 152 44.1
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 7.3e-18 94.7 152 42.8
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 9.6e-18 94.4 157 43.3
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 2.1e-17 93.2 170 41.2
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 2.1e-17 93.2 152 42.1
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 3.6e-17 92.4 173 39.3
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 6.2e-17 91.7 166 39.2
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 8.1e-17 91.3 151 45.7
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 2.4e-16 89.7 170 40.6
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 2.4e-16 89.7 100 49.0
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 5.3e-16 88.6 159 42.1
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 5.3e-16 88.6 172 44.8
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 5.3e-16 88.6 106 52.8
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 9.0e-16 87.8 169 36.7
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 1.2e-15 87.4 174 41.4
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 1.5e-15 87.0 164 41.5
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.5e-15 87.0 164 41.5
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 2.0e-15 86.7 106 50.0
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 2.6e-15 86.3 119 41.2
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 3.4e-15 85.9 104 47.1
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 4.5e-15 85.5 145 37.9
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 7.6e-15 84.7 119 40.3
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 7.6e-15 84.7 125 43.2
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 7.6e-15 84.7 98 48.0
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 9.9e-15 84.3 163 41.1
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 9.9e-15 84.3 163 40.5
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 1.3e-14 84.0 131 40.5
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 1.1e-13 80.9 138 39.9
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 2.4e-13 79.7 111 42.3
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 4.2e-13 79.0 103 48.5
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 9.3e-13 77.8 129 39.5
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 9.3e-13 77.8 133 42.1
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 2.1e-12 76.6 150 36.0
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 2.1e-12 76.6 150 36.0
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 2.7e-12 76.3 101 42.6
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 3.5e-12 75.9 155 36.1
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 3.5e-12 75.9 155 36.1
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 4.6e-12 75.5 100 48.0
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 4.6e-12 75.5 156 35.9
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 4.6e-12 75.5 143 36.4
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 1.0e-11 74.3 167 38.3
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 1.0e-11 74.3 132 40.2
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 2.3e-11 73.2 119 37.8
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 3.0e-11 72.8 97 42.3
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 6.7e-11 71.6 105 41.9
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 1.1e-10 70.9 120 36.7
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 2.5e-10 69.7 127 37.0
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 2.5e-10 69.7 118 39.8
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 2.5e-10 69.7 140 39.3
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 3.3e-10 69.3 131 39.7
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 9.6e-10 67.8 102 42.2
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 2.1e-09 66.6 130 36.2
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 1.4e-08 63.9 124 33.9
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 2.4e-08 63.2 100 42.0
Nitab4.5_0001587g0050 Nicotiana tabacum HOM05D007890 ORTHO05D009945 1.5e-07 60.5 94 41.5
CSS0004739 Camellia sinensis var. sinensis HOM05D007890 ORTHO05D009945 2.0e-07 60.1 64 54.7
TAR633G1577 Trochodendron aralioides HOM05D007890 ORTHO05D009945 4.5e-07 58.9 65 49.2
Duzib170G0703 Durio zibethinus HOM05D007890 ORTHO05D009945 2.9e-06 56.2 93 43.0
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 4.9e-06 55.5 160 34.4


User provided reference genes

Program Settings