Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 4.1e-51 204.5 110 100.0
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 2.8e-23 112.1 111 63.1
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 5.2e-22 107.8 115 60.0
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.7e-20 102.8 112 60.7
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.7e-20 102.8 110 60.0
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 2.9e-20 102.1 112 59.8
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.9e-20 101.3 113 61.9
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.1e-19 100.1 111 55.0
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.1e-19 100.1 111 55.0
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.9e-19 99.4 110 54.5
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.2e-19 98.6 114 59.6
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 4.1e-19 98.2 111 57.7
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 5.4e-19 97.8 112 57.1
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.2e-18 96.7 110 51.8
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.6e-18 96.3 111 56.8
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.6e-18 96.3 111 55.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 6.0e-18 94.4 111 55.9
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.0e-17 93.6 111 57.7
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 1.0e-17 93.6 110 53.6
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.3e-17 93.2 112 53.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.7e-17 92.8 110 52.7
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.7e-17 92.8 110 52.7
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 2.3e-17 92.4 111 55.0
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.3e-17 92.4 111 55.0
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 3.0e-17 92.0 111 55.0
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.0e-17 92.0 114 55.3
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 3.0e-17 92.0 114 54.4
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 3.0e-17 92.0 110 53.6
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 3.9e-17 91.7 113 54.9
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.9e-17 91.7 117 53.0
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 5.1e-17 91.3 110 51.8
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 5.1e-17 91.3 110 50.0
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 6.6e-17 90.9 121 52.1
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 6.6e-17 90.9 111 56.8
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 6.6e-17 90.9 112 57.1
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 55.0
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.5e-16 89.7 109 55.0
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.5e-16 89.0 112 52.7
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 4.3e-16 88.2 114 52.6
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 4.3e-16 88.2 119 53.8
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 5.6e-16 87.8 116 54.3
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 5.6e-16 87.8 116 54.3
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.3e-16 87.4 101 47.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 7.3e-16 87.4 110 51.8
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 7.3e-16 87.4 111 50.5
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 9.6e-16 87.0 108 53.7
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.2e-15 86.7 110 51.8
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.6e-15 86.3 109 52.3
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.6e-15 86.3 113 49.6
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.6e-15 86.3 111 51.4
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.6e-15 86.3 113 48.7
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 2.1e-15 85.9 110 50.9
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 2.1e-15 85.9 114 52.6
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 2.1e-15 85.9 111 49.5
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.1e-15 85.9 115 52.2
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.1e-15 85.9 112 50.0
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 2.8e-15 85.5 114 49.1
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 2.8e-15 85.5 109 50.5
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.8e-15 85.5 108 50.9
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 6.2e-15 84.3 114 50.9
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 6.2e-15 84.3 112 53.6
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 6.2e-15 84.3 114 50.9
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 6.2e-15 84.3 114 50.9
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 6.2e-15 84.3 111 51.4
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 1.1e-14 83.6 115 47.0
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.4e-14 83.2 112 53.6
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-14 83.2 112 53.6
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.4e-14 83.2 112 53.6
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.4e-14 83.2 111 51.4
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.4e-14 83.2 109 45.9
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.8e-14 82.8 109 48.6
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.8e-14 82.8 111 50.5
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.4e-14 82.4 116 51.7
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.4e-14 82.4 116 51.7
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.1e-14 82.0 109 48.6
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.1e-14 82.0 110 49.1
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 3.1e-14 82.0 112 50.0
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 3.1e-14 82.0 112 50.0
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.1e-14 82.0 112 46.4
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 4.0e-14 81.6 110 51.8
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.0e-14 81.6 112 50.0
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 4.0e-14 81.6 112 52.7
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 4.0e-14 81.6 112 50.9
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 5.2e-14 81.3 112 52.7
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 5.2e-14 81.3 112 52.7
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 5.2e-14 81.3 112 52.7
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 5.2e-14 81.3 88 59.1
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 5.2e-14 81.3 111 51.4
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 5.2e-14 81.3 116 49.1
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 5.2e-14 81.3 107 44.9
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 6.9e-14 80.9 110 47.3
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 9.0e-14 80.5 110 50.0
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.2e-13 80.1 77 59.7
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.2e-13 80.1 117 47.9
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 1.5e-13 79.7 112 50.0
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.5e-13 79.7 117 52.1
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.0e-13 79.3 113 54.0
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 2.0e-13 79.3 110 50.0
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 2.6e-13 79.0 106 47.2
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.4e-13 78.2 109 52.3
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 5.8e-13 77.8 114 48.2
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 5.8e-13 77.8 114 47.4
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 5.8e-13 77.8 115 47.8
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 7.6e-13 77.4 109 48.6
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-12 76.6 109 48.6
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-12 76.6 109 48.6
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.3e-12 76.6 113 48.7
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.3e-12 76.6 110 50.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 2.2e-12 75.9 113 49.6
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 2.2e-12 75.9 112 51.8
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 2.9e-12 75.5 112 49.1
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 2.9e-12 75.5 109 45.9
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.1e-11 73.6 111 47.7
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 1.1e-11 73.6 114 48.2
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.1e-11 73.6 78 56.4
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.1e-11 73.6 109 47.7
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.9e-11 72.8 108 46.3
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 2.4e-11 72.4 110 46.4
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 3.2e-11 72.0 114 45.6
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 4.2e-11 71.6 110 45.5
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 5.4e-11 71.2 113 45.1
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 9.3e-11 70.5 111 47.7
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.6e-10 69.7 120 44.2
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.6e-10 69.7 110 47.3
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-10 69.3 116 47.4
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 2.1e-10 69.3 119 40.3
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 2.1e-10 69.3 116 44.0
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 3.5e-10 68.6 116 45.7
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 4.6e-10 68.2 119 46.2
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.6e-10 68.2 108 50.0
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.0e-09 67.0 116 44.0
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.3e-09 66.6 107 42.1
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 1.7e-09 66.2 109 42.2
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 3.9e-09 65.1 97 45.4
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 3.9e-09 65.1 112 46.4
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 5.1e-09 64.7 115 44.3
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 6.6e-09 64.3 40 77.5
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.1e-08 63.5 96 51.0
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.5e-08 63.2 38 78.9
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 4.3e-08 61.6 40 75.0
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 5.6e-08 61.2 120 39.2
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 3.6e-07 58.5 106 44.3
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 4.8e-07 58.2 116 44.0
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 4.8e-07 58.2 116 44.0
AagrBONN_evm.TU.Sc2ySwM_344.1747 Anthoceros agrestis HOM05D024154 ORTHO05D023530 6.2e-07 57.8 117 40.2
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 6.2e-07 57.8 40 72.5
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 8.1e-07 57.4 117 39.3
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 8.1e-07 57.4 117 39.3
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 1.4e-06 56.6 119 42.0
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.8e-06 56.2 97 44.3
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 2.4e-06 55.8 114 39.5
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.4e-06 55.8 38 71.1
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 3.1e-06 55.5 111 43.2
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 4.0e-06 55.1 38 71.1
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 6.9e-06 54.3 75 42.7
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 6.9e-06 54.3 113 42.5


User provided reference genes

Program Settings