Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.4e-276 954.1 529 100.0
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 8.0e-161 571.2 532 65.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 4.6e-156 555.4 538 61.7
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 1.0e-155 554.3 538 61.5
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 8.6e-155 551.2 522 61.1
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 1.8e-152 543.5 537 59.8
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 2.6e-151 539.7 509 61.9
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.3e-147 527.3 534 59.2
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 8.6e-147 524.6 524 60.1
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 4.7e-145 518.8 534 59.0
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 7.6e-143 511.5 524 60.9
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 6.4e-142 508.4 530 59.1
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.4e-141 507.3 525 58.9
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 5.4e-141 505.4 528 60.6
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.5e-138 496.5 533 59.1
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 5.6e-138 495.4 514 63.0
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.6e-137 493.8 518 60.6
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 3.6e-137 492.7 528 57.6
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 8.1e-137 491.5 529 58.6
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 3.1e-136 489.6 521 58.0
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 6.4e-134 481.9 528 58.7
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 4.2e-133 479.2 528 55.3
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 3.5e-132 476.1 537 55.9
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.3e-131 474.2 534 55.2
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.7e-131 473.8 537 53.6
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.1e-129 466.8 531 55.6
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 9.9e-127 458.0 529 55.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.7e-126 457.2 562 53.0
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 2.9e-126 456.4 507 55.0
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 4.2e-125 452.6 529 54.4
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 5.4e-125 452.2 410 65.4
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.7e-124 449.9 518 55.6
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.3e-123 447.6 526 51.5
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 5.3e-120 435.6 516 51.4
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 6.9e-120 435.3 525 56.4
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.7e-118 430.6 557 52.1
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 4.9e-118 429.1 530 54.0
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 1.4e-117 427.6 526 51.3
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 9.3e-117 424.9 562 52.3
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.6e-116 424.1 529 53.9
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 3.9e-115 419.5 543 55.2
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.6e-111 406.8 529 52.9
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 2.9e-110 403.3 518 50.0
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 2.9e-110 403.3 477 52.8
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 2.9e-110 403.3 477 52.8
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 1.4e-109 401.0 508 51.8
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 6.0e-108 395.6 481 51.8
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 1.3e-107 394.4 474 53.2
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.3e-107 393.7 490 53.3
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.3e-107 393.7 536 52.4
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 6.7e-107 392.1 549 49.5
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 8.7e-107 391.7 406 57.1
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.8e-105 386.7 521 48.8
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 3.1e-104 383.3 419 54.4
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.6e-103 380.2 535 49.0
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 5.9e-103 379.0 526 48.1
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 3.6e-100 369.8 367 59.7
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 7.9e-100 368.6 535 48.2
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 7.9e-100 368.6 422 52.4
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 2.3e-99 367.1 459 51.9
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.5e-98 364.4 520 48.7
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 9.7e-98 361.7 440 52.0
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.4e-96 357.8 535 46.2
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 6.5e-94 349.0 577 44.4
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.2e-92 344.7 583 43.9
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 2.7e-92 343.6 535 48.4
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 5.1e-91 339.3 510 45.5
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.7e-89 334.3 555 45.4
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.4e-88 330.5 534 46.1
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 7.0e-88 328.9 521 44.7
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.2e-87 328.2 532 43.0
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.2e-87 328.2 497 46.1
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.5e-87 327.8 578 43.1
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.0e-87 327.4 533 46.2
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.3e-86 324.7 536 44.2
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 3.6e-84 316.6 590 44.6
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 8.0e-84 315.5 514 43.6
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 1.4e-83 314.7 516 42.8
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 1.7e-81 307.8 402 49.0
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 4.8e-81 306.2 422 48.1
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 4.8e-81 306.2 595 42.5
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 8.5e-78 295.4 528 43.8
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 1.5e-77 294.7 534 42.3
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 6.1e-76 289.3 516 39.3
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 8.0e-76 288.9 541 41.2
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.0e-75 287.0 502 42.8
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 2.6e-74 283.9 526 40.1
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 2.4e-72 277.3 561 40.1
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 4.1e-72 276.6 524 39.3
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 5.3e-72 276.2 496 41.3
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.3e-72 276.2 312 56.1
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.3e-70 271.6 583 38.1
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 1.7e-70 271.2 542 39.9
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 1.7e-70 271.2 518 40.9
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.9e-70 270.4 585 39.7
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 2.9e-70 270.4 515 44.7
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 8.5e-70 268.9 516 41.1
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 9.4e-69 265.4 471 41.8
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 2.3e-67 260.8 528 37.7
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 3.7e-65 253.4 564 37.1
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 2.7e-63 247.3 604 38.9
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 5.9e-63 246.1 599 39.1
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 7.7e-63 245.7 514 38.5
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.4e-59 235.0 514 37.2
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 9.8e-58 228.8 494 37.4
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 8.3e-57 225.7 542 35.1
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 5.4e-56 223.0 516 36.6
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 3.5e-55 220.3 539 35.6
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.0e-54 218.8 499 36.1
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 5.0e-54 216.5 455 37.1
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 2.5e-53 214.2 507 34.3
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 2.8e-52 210.7 514 35.6
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.8e-51 208.0 511 36.0
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 2.3e-51 207.6 514 35.6
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 2.4e-48 197.6 513 35.1
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.7e-47 194.1 293 46.8
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 2.3e-46 191.0 495 35.4
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-45 188.7 517 34.8
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 1.6e-44 184.9 494 33.8
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 3.6e-44 183.7 495 34.5
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.4e-43 181.8 495 34.3
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 3.1e-43 180.6 513 33.9
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 6.8e-43 179.5 340 45.0
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 9.8e-42 175.6 472 35.2
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.3e-41 175.3 452 33.6
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.2e-41 174.5 309 42.7
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 4.6e-39 166.8 310 41.6
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.3e-38 164.5 189 58.2
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 5.6e-37 159.8 378 35.7
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.5e-29 135.2 392 32.1
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.5e-29 134.4 217 41.0
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 1.6e-28 131.7 142 52.8
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 2.4e-27 127.9 260 36.5
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.2e-26 125.6 311 38.6
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.1e-24 119.0 124 48.4
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 1.6e-23 115.2 126 53.2
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 1.7e-22 111.7 249 33.3
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 5.1e-22 110.2 97 55.7
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 8.1e-20 102.8 110 55.5
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 4.4e-18 97.1 348 29.6
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 1.6e-12 78.6 341 26.4
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 9.0e-11 72.8 234 32.5
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 1.4e-08 65.5 229 31.4
Mapoly0001s0089 Marchantia polymorpha HOM05D001846 ORTHO05D005785 9.3e-08 62.8 359 23.1
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.3e-06 58.9 82 46.3
SEGI_28173 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 3.0e-06 57.8 171 28.7


User provided reference genes

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