Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 8.4e-105 383.6 186 100.0
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 1.2e-98 363.2 186 93.5
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 7.6e-98 360.5 186 91.4
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 2.2e-97 359.0 186 90.9
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 3.8e-97 358.2 186 90.9
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 1.1e-96 356.7 186 91.4
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.4e-96 356.3 186 90.9
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 2.4e-96 355.5 186 89.2
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 1.2e-95 353.2 186 88.7
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 3.0e-94 348.6 186 87.6
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 8.7e-94 347.1 186 88.7
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 4.3e-93 344.7 186 86.0
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 7.3e-93 344.0 186 87.1
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 7.3e-93 344.0 186 88.2
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 7.3e-93 344.0 185 86.5
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.3e-92 343.2 186 86.6
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 1.6e-92 342.8 186 85.5
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 3.6e-92 341.7 186 84.4
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 4.8e-92 341.3 186 86.6
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 86.0
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 84.9
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 84.4
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 2.4e-91 339.0 186 84.4
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 5.3e-91 337.8 186 83.9
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 6.9e-91 337.4 186 83.3
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 6.9e-91 337.4 186 83.9
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 6.9e-91 337.4 186 83.9
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 9.0e-91 337.0 186 82.3
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 1.5e-90 336.3 186 83.9
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 2.0e-90 335.9 187 84.5
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 2.0e-90 335.9 184 83.7
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 2.0e-90 335.9 185 83.8
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 84.4
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 84.9
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 3.4e-90 335.1 186 81.7
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 4.5e-90 334.7 185 83.2
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 80.6
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 80.6
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 83.9
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 5.8e-90 334.3 185 83.2
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 82.8
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 83.9
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.7e-89 332.8 184 83.2
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 2.9e-89 332.0 186 82.3
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 3.8e-89 331.6 186 84.4
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 6.4e-89 330.9 186 82.3
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 6.4e-89 330.9 185 82.7
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 8.4e-89 330.5 180 82.8
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.9e-88 329.3 180 83.9
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.9e-88 329.3 186 80.6
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.9e-88 329.3 186 83.3
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 2.4e-88 328.9 184 82.6
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 3.2e-88 328.6 186 81.2
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 4.2e-88 328.2 184 81.0
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 4.2e-88 328.2 184 82.1
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 7.1e-88 327.4 180 83.3
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.2e-87 326.6 186 80.6
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.2e-87 326.6 180 81.7
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.2e-87 326.6 184 80.4
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 1.2e-87 326.6 186 80.6
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.6e-87 326.2 186 80.6
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 2.1e-87 325.9 184 81.0
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 2.1e-87 325.9 183 83.6
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 2.7e-87 325.5 183 83.1
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 2.7e-87 325.5 183 84.2
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 2.7e-87 325.5 183 83.1
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 2.7e-87 325.5 184 82.1
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 3.5e-87 325.1 186 80.6
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 4.6e-87 324.7 182 80.8
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 4.6e-87 324.7 186 79.6
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 4.6e-87 324.7 184 81.0
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 6.0e-87 324.3 183 83.1
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 6.0e-87 324.3 182 81.9
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 6.0e-87 324.3 182 81.9
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 7.9e-87 323.9 183 82.5
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 7.9e-87 323.9 183 82.5
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 7.9e-87 323.9 184 81.5
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 1.0e-86 323.6 183 81.4
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 3.9e-86 321.6 178 83.1
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 3.9e-86 321.6 184 79.9
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.9e-86 321.6 184 79.9
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.9e-86 321.6 184 79.9
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 6.7e-86 320.9 183 80.9
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 6.7e-86 320.9 183 80.9
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 6.7e-86 320.9 183 80.9
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 6.7e-86 320.9 186 83.3
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 6.7e-86 320.9 186 80.1
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 6.7e-86 320.9 184 79.3
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 6.7e-86 320.9 172 86.6
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 8.7e-86 320.5 180 80.0
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 1.1e-85 320.1 180 79.4
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 1.5e-85 319.7 183 80.3
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 1.9e-85 319.3 185 79.5
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 2.5e-85 318.9 183 80.3
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 3.3e-85 318.5 183 79.8
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 5.6e-85 317.8 183 79.8
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 5.6e-85 317.8 184 79.9
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 7.4e-85 317.4 183 79.8
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 9.6e-85 317.0 183 79.2
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 9.6e-85 317.0 183 79.2
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 2.8e-84 315.5 186 80.1
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 2.6e-82 308.9 186 73.7
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 4.5e-82 308.1 178 80.3
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 1.3e-81 306.6 186 76.9
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 1.3e-81 306.6 187 78.1
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 2.9e-81 305.4 186 76.3
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.8e-81 305.1 185 77.3
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 6.4e-81 304.3 187 77.5
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 9.3e-80 300.4 186 76.9
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 6.0e-79 297.7 184 75.0
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 5.6e-77 291.2 173 76.3
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 7.4e-77 290.8 186 73.7
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 1.3e-76 290.0 186 73.1
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 2.8e-76 288.9 186 73.7
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 6.2e-76 287.7 186 72.0
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 5.3e-75 284.6 186 72.0
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 1.5e-74 283.1 186 71.0
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 3.4e-74 282.0 186 71.0
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 5.8e-74 281.2 186 71.0
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 1.5e-69 266.5 186 66.7
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 4.3e-61 238.4 183 54.1
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 2.5e-56 222.6 180 55.0
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.2e-55 220.3 189 53.4
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.7e-55 219.2 172 62.2
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 2.3e-54 216.1 177 52.0
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 7.4e-53 211.1 185 49.7
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 3.1e-51 205.7 175 52.6
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 7.4e-45 184.5 151 56.3
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 2.9e-41 172.6 180 48.3
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 8.3e-36 154.5 89 80.9
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.6e-34 150.2 194 42.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 1.6e-26 123.6 90 64.4
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 9.8e-21 104.4 157 35.0
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 2.8e-20 102.8 54 85.2
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 8.6e-09 64.7 88 37.5


User provided reference genes

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