Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 8.3e-68 260.4 145 100.0
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 1.6e-39 166.4 151 68.2
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 4.5e-29 131.7 78 91.0
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 5.1e-25 118.2 218 41.3
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 9.6e-24 114.0 95 66.3
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 1.1e-22 110.5 86 70.9
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 1.1e-22 110.5 220 39.1
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 5.3e-22 108.2 89 66.3
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 9.0e-22 107.5 223 38.1
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 2.0e-21 106.3 87 65.5
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 2.6e-21 105.9 87 65.5
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 5.8e-21 104.8 232 37.5
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 1.7e-20 103.2 224 40.6
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.2e-20 102.8 94 58.5
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 3.8e-20 102.1 93 62.4
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 1.4e-19 100.1 210 35.2
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.9e-19 99.8 182 41.2
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.9e-19 99.8 220 36.4
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 1.9e-19 99.8 232 35.3
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.5e-19 99.4 94 56.4
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.5e-19 99.4 182 41.8
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.2e-19 99.0 182 41.2
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 3.2e-19 99.0 198 39.9
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 3.2e-19 99.0 182 41.8
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 4.2e-19 98.6 208 37.5
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 7.1e-19 97.8 182 40.7
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 9.3e-19 97.4 220 35.9
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 9.3e-19 97.4 216 37.0
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-18 97.1 182 40.7
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 2.7e-18 95.9 94 55.3
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 3.5e-18 95.5 208 35.6
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 4.6e-18 95.1 179 39.1
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 7.9e-18 94.4 213 36.2
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 7.9e-18 94.4 182 40.1
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.3e-17 93.6 224 33.9
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 1.8e-17 93.2 197 36.0
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 2.3e-17 92.8 82 62.2
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 3.0e-17 92.4 82 59.8
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 3.0e-17 92.4 82 61.0
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 3.0e-17 92.4 82 59.8
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 3.0e-17 92.4 82 59.8
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 3.0e-17 92.4 89 58.4
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 3.0e-17 92.4 89 58.4
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 6.7e-17 91.3 214 35.0
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 6.7e-17 91.3 82 61.0
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 6.7e-17 91.3 222 35.6
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 6.7e-17 91.3 179 38.5
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 1.1e-16 90.5 207 35.3
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.5e-16 90.1 186 34.9
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.9e-16 89.7 222 34.7
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 2.5e-16 89.4 110 50.0
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 4.3e-16 88.6 176 38.1
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 5.7e-16 88.2 195 35.9
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 5.7e-16 88.2 210 33.8
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 5.7e-16 88.2 212 34.4
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 9.7e-16 87.4 94 51.1
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 9.7e-16 87.4 82 57.3
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 1.3e-15 87.0 89 56.2
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 2.2e-15 86.3 89 56.2
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 2.2e-15 86.3 85 52.9
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 2.8e-15 85.9 194 37.6
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 2.8e-15 85.9 179 38.5
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 4.8e-15 85.1 201 36.8
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 4.8e-15 85.1 203 36.0
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 8.2e-15 84.3 189 34.4
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 1.1e-14 84.0 204 33.8
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 1.4e-14 83.6 220 34.1
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.1e-14 82.4 177 33.3
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 3.1e-14 82.4 189 33.3
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 3.1e-14 82.4 225 32.4
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 4.1e-14 82.0 202 33.2
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 4.1e-14 82.0 85 57.6
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 4.1e-14 82.0 83 49.4
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 4.1e-14 82.0 190 34.7
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 5.3e-14 81.6 210 32.9
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 6.9e-14 81.3 197 34.0
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 6.9e-14 81.3 86 54.7
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 6.9e-14 81.3 178 33.1
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 6.9e-14 81.3 62 62.9
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 6.9e-14 81.3 71 56.3
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 1.2e-13 80.5 203 33.5
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.2e-13 80.5 84 52.4
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.2e-13 80.5 86 54.7
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 1.2e-13 80.5 111 45.9
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 1.2e-13 80.5 214 33.6
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 2.0e-13 79.7 90 54.4
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.6e-13 79.3 192 35.9
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.6e-13 79.3 192 35.9
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 5.9e-13 78.2 207 31.9
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.7e-12 76.6 190 31.6
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 1.7e-12 76.6 98 46.9
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 1.7e-12 76.6 81 53.1
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.7e-12 76.6 199 33.2
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 2.9e-12 75.9 90 52.2
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 5.0e-12 75.1 229 32.8
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 6.5e-12 74.7 184 33.2
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 6.5e-12 74.7 88 52.3
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 6.5e-12 74.7 220 33.2
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.1e-11 73.9 122 41.0
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.1e-11 73.9 184 33.7
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 1.4e-11 73.6 227 28.6
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 3.2e-11 72.4 171 35.7
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 4.2e-11 72.0 189 32.3
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 7.2e-11 71.2 80 51.2
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 9.4e-11 70.9 56 62.5
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.2e-10 70.5 93 47.3
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.6e-10 70.1 130 36.9
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.6e-10 70.1 58 62.1
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 3.6e-10 68.9 191 33.5
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.0e-09 67.4 56 62.5
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.5e-08 63.5 136 36.0
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 3.3e-08 62.4 195 29.7
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 3.1e-06 55.8 85 41.2


User provided reference genes

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