Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 9.0e-204 713.4 364 100.0
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 1.3e-162 576.6 358 81.8
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.5e-153 546.6 359 76.6
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 4.0e-151 538.5 360 75.6
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 5.2e-151 538.1 362 75.4
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 8.9e-151 537.3 359 74.9
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 8.9e-151 537.3 359 75.8
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.4e-150 535.0 362 75.7
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 5.7e-150 534.6 362 75.1
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 7.5e-150 534.3 362 74.6
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 9.8e-150 533.9 362 75.1
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 2.2e-149 532.7 361 74.5
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 6.3e-149 531.2 360 74.7
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 8.3e-149 530.8 362 74.6
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 1.8e-148 529.6 360 75.0
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.7e-147 525.8 360 74.4
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.7e-147 525.8 360 74.4
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 7.8e-147 524.2 358 75.1
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.0e-146 523.9 362 71.5
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 1.7e-146 523.1 358 74.6
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.7e-146 523.1 391 70.6
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.3e-146 522.7 360 72.8
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.3e-146 522.7 362 72.9
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 2.3e-146 522.7 359 74.7
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 5.0e-146 521.5 361 74.0
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 6.6e-146 521.2 361 72.9
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.5e-145 520.0 362 72.1
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 2.5e-145 519.2 359 74.1
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 5.6e-145 518.1 362 72.1
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 7.3e-145 517.7 360 73.3
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 9.5e-145 517.3 360 73.3
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.8e-144 515.8 360 73.1
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.0e-143 513.8 363 71.1
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.3e-143 512.7 360 73.3
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 1.5e-142 510.0 366 73.0
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 3.4e-142 508.8 364 70.9
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 9.8e-142 507.3 361 72.6
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 9.8e-142 507.3 362 71.3
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 9.8e-142 507.3 360 72.2
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.3e-141 506.9 360 69.7
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.7e-141 506.5 364 70.6
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 2.2e-141 506.1 364 70.9
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 3.7e-141 505.4 359 71.6
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 3.7e-141 505.4 360 72.2
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 6.4e-141 504.6 359 70.8
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 1.1e-140 503.8 362 69.3
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 1.4e-140 503.4 358 72.6
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 2.4e-140 502.7 358 71.2
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 3.2e-140 502.3 362 69.1
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 4.1e-140 501.9 359 71.0
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 5.4e-140 501.5 359 71.0
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 9.2e-140 500.7 362 72.1
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 2.7e-139 499.2 358 70.9
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 3.5e-139 498.8 364 69.8
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 1.3e-138 496.9 364 69.8
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.3e-138 496.1 361 73.1
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 3.0e-138 495.7 366 69.9
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 8.6e-138 494.2 362 71.3
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 1.1e-137 493.8 357 69.7
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.1e-137 493.8 362 71.5
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.9e-137 493.0 357 70.6
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.9e-137 493.0 368 71.7
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 3.6e-136 488.8 364 68.4
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 6.2e-136 488.0 364 68.4
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.4e-135 486.9 357 69.7
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 3.1e-135 485.7 366 68.0
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 6.8e-135 484.6 364 67.9
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 4.4e-134 481.9 360 70.6
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 4.4e-134 481.9 358 71.8
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 5.8e-134 481.5 314 76.4
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 2.9e-133 479.2 362 67.1
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 7.8e-131 471.1 356 68.5
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 5.1e-130 468.4 392 62.5
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 8.6e-130 467.6 473 55.0
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 9.5e-129 464.2 358 63.7
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.2e-125 453.0 360 63.6
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.7e-125 452.2 358 66.5
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 2.7e-123 446.0 357 65.0
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 4.6e-123 445.3 375 62.9
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 6.0e-123 444.9 363 62.0
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 1.0e-122 444.1 379 62.3
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 1.2e-120 437.2 369 60.2
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 3.6e-120 435.6 363 61.2
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 8.1e-120 434.5 360 63.1
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 1.8e-119 433.3 356 65.7
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 3.1e-111 406.0 362 58.8
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 9.0e-111 404.4 362 58.0
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 3.4e-110 402.5 360 59.7
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 1.2e-107 394.0 360 56.1
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.6e-102 376.3 251 75.3
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 3.4e-102 375.9 363 56.2
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 4.2e-100 369.0 255 72.9
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.1e-99 366.7 255 71.4
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.3e-96 357.5 253 71.9
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.8e-95 353.6 300 63.0
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.4e-92 344.0 354 49.4
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.4e-87 327.4 375 46.4
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.6e-86 323.2 364 51.6
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 6.5e-85 318.5 360 47.8
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 6.5e-85 318.5 361 46.0
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 2.3e-82 310.1 203 77.8
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 8.7e-82 308.1 364 47.3
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 9.7e-81 304.7 355 45.1
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 5.7e-73 278.9 345 44.3
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.1e-71 274.6 203 64.0
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.0e-66 258.1 359 40.7
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 6.7e-66 255.4 349 39.8
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 2.4e-63 246.9 357 40.1
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.7e-51 206.1 147 72.1
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 3.6e-43 179.9 148 62.2
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.4e-39 167.2 186 51.6
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.0e-34 151.8 102 70.6
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 1.8e-34 151.0 205 45.4
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.7e-32 144.4 406 29.3
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 2.2e-32 144.1 155 56.8
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.9e-32 143.7 133 57.1
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.8e-31 141.0 98 68.4
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 7.3e-28 129.0 84 72.6
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 9.5e-28 128.6 136 54.4
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 3.6e-27 126.7 100 66.0
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.4e-26 124.8 360 30.0
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 3.1e-26 123.6 79 74.7
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 1.1e-23 115.2 96 64.6
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 4.1e-23 113.2 138 52.9
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 4.3e-20 103.2 107 52.3
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 4.3e-20 103.2 107 52.3
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.3e-18 97.4 83 61.4
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 5.2e-18 96.3 84 59.5
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.7e-14 84.0 93 50.5
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.3e-13 81.6 51 74.5
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 5.6e-12 76.3 80 55.0


User provided reference genes

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