Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 1.2e-68 263.1 135 100.0
Atru.chr3.224 Acer truncatum HOM05D003477 ORTHO05D004043 1.3e-25 120.2 144 55.6
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 1.2e-23 113.6 89 66.3
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.9e-22 108.2 89 64.0
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.9e-22 108.2 87 67.8
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.2e-21 105.5 89 61.8
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.2e-21 105.5 89 61.8
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.2e-20 103.6 89 62.9
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 7.9e-20 100.9 90 65.6
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.0e-19 100.5 90 65.6
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 1.8e-19 99.8 89 65.2
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 2.3e-19 99.4 89 59.6
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.0e-19 99.0 84 64.3
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.5e-18 96.7 83 63.9
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.5e-18 96.7 93 60.2
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.5e-18 96.7 89 61.8
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.9e-18 96.3 94 54.3
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 2.5e-18 95.9 89 60.7
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 2.5e-18 95.9 89 59.6
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 4.3e-18 95.1 89 62.9
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 9.6e-18 94.0 93 60.2
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 1.3e-17 93.6 91 61.5
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.3e-17 93.6 93 60.2
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 1.3e-17 93.6 89 57.3
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 1.3e-17 93.6 92 62.0
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 2.8e-17 92.4 94 61.7
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 3.6e-17 92.0 89 58.4
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.8e-17 91.7 89 61.8
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.8e-17 91.7 89 61.8
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 4.8e-17 91.7 92 60.9
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 6.2e-17 91.3 89 59.6
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 6.2e-17 91.3 91 60.4
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 8.1e-17 90.9 89 58.4
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 8.1e-17 90.9 89 58.4
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 8.1e-17 90.9 90 57.8
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.4e-16 90.1 89 62.9
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.8e-16 89.7 90 55.6
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 1.8e-16 89.7 94 57.4
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 1.8e-16 89.7 94 58.5
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 2.4e-16 89.4 77 61.0
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 3.1e-16 89.0 97 54.6
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 3.1e-16 89.0 89 57.3
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 4.0e-16 88.6 89 59.6
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 5.3e-16 88.2 92 57.6
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 6.9e-16 87.8 92 58.7
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 6.9e-16 87.8 94 53.2
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 6.9e-16 87.8 89 56.2
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 9.0e-16 87.4 89 55.1
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 9.0e-16 87.4 90 57.8
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.2e-15 87.0 89 59.6
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.2e-15 87.0 89 55.1
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.5e-15 86.7 92 58.7
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 2.0e-15 86.3 89 56.2
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 2.0e-15 86.3 84 56.0
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.6e-15 85.9 92 57.6
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 2.6e-15 85.9 89 56.2
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 2.6e-15 85.9 91 53.8
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 2.6e-15 85.9 89 50.6
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 2.6e-15 85.9 93 57.0
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 3.4e-15 85.5 90 56.7
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.4e-15 85.5 89 57.3
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.4e-15 85.5 90 56.7
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 4.5e-15 85.1 89 60.7
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 4.5e-15 85.1 90 55.6
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 4.5e-15 85.1 89 58.4
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 5.8e-15 84.7 93 55.9
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 5.8e-15 84.7 90 54.4
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 7.6e-15 84.3 90 55.6
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 9.9e-15 84.0 90 53.3
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 1.3e-14 83.6 89 60.7
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 1.3e-14 83.6 90 54.4
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 1.3e-14 83.6 89 51.7
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 1.3e-14 83.6 89 56.2
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.3e-14 83.6 90 56.7
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 1.7e-14 83.2 90 53.3
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.7e-14 83.2 90 54.4
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 1.7e-14 83.2 89 57.3
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 2.2e-14 82.8 89 48.3
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 3.8e-14 82.0 90 53.3
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 3.8e-14 82.0 89 53.9
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 3.8e-14 82.0 93 54.8
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.8e-14 82.0 90 54.4
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 4.9e-14 81.6 92 53.3
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 4.9e-14 81.6 90 53.3
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 8.4e-14 80.9 89 56.2
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 8.4e-14 80.9 91 51.6
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.1e-13 80.5 90 53.3
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.1e-13 80.5 90 53.3
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 1.1e-13 80.5 91 50.5
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 1.1e-13 80.5 91 56.0
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 1.4e-13 80.1 88 53.4
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 1.4e-13 80.1 89 55.1
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 1.4e-13 80.1 89 49.4
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 1.4e-13 80.1 90 54.4
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 1.9e-13 79.7 90 55.6
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 2.4e-13 79.3 95 52.6
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 2.4e-13 79.3 90 60.0
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.2e-13 79.0 90 52.2
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 4.2e-13 78.6 90 50.0
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 4.2e-13 78.6 90 51.1
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 5.5e-13 78.2 89 51.7
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 9.3e-13 77.4 89 56.2
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 9.3e-13 77.4 89 51.7
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 9.3e-13 77.4 90 51.1
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 9.3e-13 77.4 90 54.4
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 9.3e-13 77.4 89 55.1
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.6e-12 76.6 89 50.6
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.6e-12 76.6 90 51.1
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.6e-12 76.6 90 52.2
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 1.6e-12 76.6 89 53.9
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 2.1e-12 76.3 92 51.1
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 2.7e-12 75.9 94 52.1
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 3.5e-12 75.5 92 51.1
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 3.5e-12 75.5 92 51.1
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 3.5e-12 75.5 92 51.1
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.5e-12 75.5 89 55.1
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 3.5e-12 75.5 90 50.0
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 4.6e-12 75.1 91 53.8
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 7.9e-12 74.3 90 53.3
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 7.9e-12 74.3 89 50.6
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.0e-11 73.9 90 52.2
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.0e-11 73.9 90 53.3
Glyma.18G192300 Glycine max HOM05D003477 ORTHO05D004043 1.3e-11 73.6 89 50.6
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 1.3e-11 73.6 89 51.7
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 1.8e-11 73.2 89 53.9
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 2.3e-11 72.8 90 46.7
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 2.3e-11 72.8 89 55.1
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 2.3e-11 72.8 84 53.6
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.9e-11 72.0 91 51.6
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 5.1e-11 71.6 89 48.3
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 8.7e-11 70.9 90 50.0
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 8.7e-11 70.9 82 54.9
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 1.9e-10 69.7 90 54.4
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 2.5e-10 69.3 89 49.4
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 3.3e-10 68.9 89 49.4
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.3e-10 68.9 89 49.4
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 4.3e-10 68.6 90 50.0
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 9.6e-10 67.4 94 51.1
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 9.6e-10 67.4 89 51.7
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 1.3e-09 67.0 89 46.1
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.6e-09 66.6 92 48.9
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.6e-09 66.6 92 48.9
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.6e-09 66.6 92 48.9
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.1e-09 66.2 91 49.5
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 2.8e-09 65.9 85 49.4
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 3.7e-09 65.5 91 50.5
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 8.2e-09 64.3 84 51.2
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 1.1e-08 63.9 70 50.0
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.4e-08 63.5 96 46.9
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 1.8e-08 63.2 84 51.2
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.4e-08 62.8 92 47.8
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.4e-08 62.8 92 47.8
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.4e-08 62.8 92 47.8
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 2.4e-08 62.8 90 42.2
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.1e-08 62.4 84 51.2
Haze_15335 Corylus avellana HOM05D003477 ORTHO05D004043 6.9e-08 61.2 89 49.4
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.9e-08 61.2 84 50.0
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 9.0e-08 60.8 92 46.7
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 9.0e-08 60.8 92 46.7
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 9.0e-08 60.8 92 46.7
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 9.0e-08 60.8 92 46.7
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.0e-08 60.8 84 50.0
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.0e-08 60.8 84 50.0
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 1.2e-07 60.5 35 80.0
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.0e-07 59.7 90 42.2
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 2.6e-07 59.3 91 44.0
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 2.6e-07 59.3 84 44.0
SGA_v2.0_scaffold13G06619 Striga asiatica HOM05D003477 ORTHO05D004043 2.6e-07 59.3 112 42.9
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 3.4e-07 58.9 91 41.8
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 4.5e-07 58.5 92 44.6
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 5.8e-07 58.2 91 44.0
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 5.8e-07 58.2 91 46.2
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 5.8e-07 58.2 41 61.0
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 7.6e-07 57.8 91 44.0
SalBow6G1437 Salvia bowleyana HOM05D003477 ORTHO05D004043 7.6e-07 57.8 66 56.1
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 1.0e-06 57.4 77 50.6
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.0e-06 57.4 90 46.7
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.3e-06 57.0 37 62.2
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 1.7e-06 56.6 91 40.7
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 1.7e-06 56.6 91 40.7
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 3.8e-06 55.5 90 46.7


User provided reference genes

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