Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-149 532.7 298 100.0
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 7.8e-137 490.7 279 99.3
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 5.1e-96 355.1 422 56.2
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.8e-85 320.1 449 46.3
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.9e-83 312.8 432 46.3
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.9e-83 312.8 449 45.7
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 7.2e-82 308.1 449 45.4
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.6e-81 305.8 449 45.2
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.0e-80 304.3 448 44.2
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.8e-78 296.2 448 43.1
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.7e-78 295.8 448 43.5
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.4e-77 293.1 446 47.5
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.2e-76 290.8 447 44.7
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 1.2e-76 290.8 446 47.8
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 3.2e-74 282.7 448 42.4
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 5.5e-74 282.0 463 41.7
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.6e-73 278.9 448 40.4
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 1.8e-72 276.9 168 81.0
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.0e-72 276.2 448 41.3
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 3.9e-72 275.8 448 45.1
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 3.7e-70 269.2 448 40.6
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.1e-69 267.7 452 40.5
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 6.9e-69 265.0 171 77.8
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 9.1e-69 264.6 451 39.2
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.3e-67 260.8 168 79.8
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.7e-67 260.4 172 78.5
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 5.0e-67 258.8 448 39.1
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 8.5e-67 258.1 448 39.7
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.1e-66 257.7 459 39.2
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 2.5e-66 256.5 168 78.0
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 5.5e-66 255.4 168 73.8
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 9.4e-66 254.6 461 38.8
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 9.4e-66 254.6 168 74.4
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.2e-65 254.2 168 75.6
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.2e-65 254.2 462 37.9
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 2.7e-65 253.1 448 39.5
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 4.7e-65 252.3 172 73.8
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 7.9e-65 251.5 168 75.6
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.0e-64 251.1 168 75.0
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.0e-64 251.1 168 73.2
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.4e-64 250.8 172 70.9
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 2.3e-64 250.0 168 73.8
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 8.8e-64 248.1 168 76.2
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.0e-63 246.9 169 75.7
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 2.6e-63 246.5 449 39.0
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.6e-63 246.5 422 39.3
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 5.7e-63 245.4 167 75.4
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 7.4e-63 245.0 168 73.8
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 7.4e-63 245.0 447 38.5
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.3e-62 244.2 168 75.6
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.7e-62 243.8 168 73.8
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.7e-62 243.8 169 70.4
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-62 243.0 168 73.2
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 4.8e-62 242.3 169 73.4
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 1.6e-60 237.3 168 72.0
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.0e-59 234.6 168 73.2
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.3e-59 234.2 172 67.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 2.2e-59 233.4 154 79.2
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 2.9e-59 233.0 168 72.6
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.9e-58 230.3 168 69.0
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 3.2e-58 229.6 433 38.1
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 7.2e-58 228.4 163 73.0
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 7.2e-58 228.4 142 80.3
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 7.2e-58 228.4 504 34.9
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.6e-57 227.3 168 69.0
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 2.1e-57 226.9 168 70.2
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 2.1e-57 226.9 432 38.0
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.1e-57 226.9 469 35.8
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.7e-57 226.5 168 70.2
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 4.7e-57 225.7 168 70.8
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.7e-57 225.7 422 38.6
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.1e-57 225.3 428 36.9
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 8.0e-57 224.9 202 58.4
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 4.0e-56 222.6 142 77.5
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.8e-56 221.5 168 67.9
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.1e-55 221.1 142 76.8
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 3.3e-55 219.5 168 68.5
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 3.3e-55 219.5 168 68.5
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.7e-55 218.8 168 67.9
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 7.5e-55 218.4 423 42.1
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 9.7e-55 218.0 143 76.9
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.3e-54 217.6 142 74.6
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.8e-54 216.5 142 73.2
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 3.7e-54 216.1 150 72.7
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 4.8e-54 215.7 142 76.8
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.8e-54 215.7 142 73.9
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 4.8e-54 215.7 142 75.4
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.3e-54 215.3 142 73.9
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 8.2e-54 214.9 168 63.7
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-53 214.5 141 75.9
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.1e-53 214.5 141 75.9
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.4e-53 214.2 425 36.0
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.4e-53 213.4 143 77.6
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 3.1e-53 213.0 142 73.9
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 5.3e-53 212.2 142 72.5
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 7.0e-53 211.8 404 36.4
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.2e-52 211.1 426 36.2
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 1.2e-52 211.1 142 74.6
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.6e-52 210.7 438 35.8
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.0e-51 208.0 170 64.7
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.0e-51 208.0 145 67.6
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.3e-51 207.6 170 61.8
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 2.9e-51 206.5 145 66.2
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 2.9e-51 206.5 141 74.5
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.0e-51 205.7 168 61.9
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.5e-50 204.1 143 70.6
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 3.2e-50 203.0 132 75.8
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 4.2e-50 202.6 148 68.9
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 7.2e-50 201.8 194 59.8
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 7.2e-50 201.8 132 77.3
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.2e-49 201.1 451 36.4
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 3.0e-48 196.4 168 61.9
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 3.0e-48 196.4 149 67.8
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 3.0e-48 196.4 170 63.5
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 5.2e-48 195.7 169 60.4
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 4.4e-47 192.6 174 56.3
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 5.7e-47 192.2 493 34.9
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 7.5e-47 191.8 254 47.2
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.3e-46 191.0 165 58.2
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.2e-46 190.3 224 47.8
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-46 189.9 168 59.5
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 3.7e-46 189.5 167 59.9
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 3.7e-46 189.5 168 58.3
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 6.3e-46 188.7 168 59.5
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 8.3e-46 188.3 168 58.9
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.1e-45 188.0 168 57.7
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.0e-44 183.7 119 76.5
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.7e-44 183.3 142 63.4
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 1.7e-43 180.6 405 36.3
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.7e-43 180.6 118 78.0
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.9e-42 177.2 126 70.6
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 2.5e-42 176.8 118 72.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.2e-42 176.4 134 65.7
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 2.0e-39 167.2 485 32.2
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.0e-39 167.2 446 30.7
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-39 166.4 193 50.8
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 4.4e-39 166.0 166 51.2
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 7.5e-39 165.2 164 57.3
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 2.8e-38 163.3 142 63.4
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 3.7e-38 162.9 385 33.2
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.8e-37 160.6 181 48.1
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-37 160.2 131 61.8
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.4e-37 160.2 131 61.8
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 4.1e-37 159.5 114 70.2
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 3.5e-36 156.4 93 83.9
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 5.9e-36 155.6 133 55.6
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 7.3e-34 148.7 102 68.6
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 6.1e-33 145.6 148 55.4
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.5e-31 141.0 118 60.2
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 9.8e-31 138.3 113 61.1
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.8e-29 134.0 83 77.1
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 9.2e-29 131.7 177 42.4
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 5.6e-26 122.5 72 88.9
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 8.0e-25 118.6 84 67.9
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.0e-24 118.2 163 41.1
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 1.4e-24 117.9 72 86.1
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 5.2e-24 115.9 115 54.8
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-23 114.8 99 56.6
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 2.6e-23 113.6 201 38.8
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.4e-21 107.1 79 63.3
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-21 107.1 88 59.1
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 9.2e-21 105.1 94 55.3
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.7e-20 103.6 101 53.5
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 2.7e-20 103.6 112 57.1
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.0e-19 101.7 98 55.1
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 3.0e-19 100.1 67 71.6
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 3.9e-19 99.8 72 70.8
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.8e-16 90.9 92 54.3
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 1.2e-15 88.2 113 46.9
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.5e-15 87.8 64 71.9
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.9e-13 80.9 96 51.0
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 3.9e-11 73.2 97 45.4
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 8.6e-11 72.0 54 57.4
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 8.6e-11 72.0 54 57.4
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 1.1e-10 71.6 49 63.3
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.2e-08 62.8 48 64.6
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 2.9e-06 57.0 62 51.6
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 4.9e-06 56.2 65 50.8
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 8.4e-06 55.5 84 41.7


User provided reference genes

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