Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 9.3e-30 132.9 67 100.0
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 2.9e-15 84.7 68 64.7
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 4.9e-15 84.0 58 70.7
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 4.9e-15 84.0 64 64.1
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 8.4e-15 83.2 64 64.1
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 1.9e-14 82.0 60 73.3
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 1.9e-14 82.0 66 62.1
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 2.4e-14 81.6 57 71.9
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 2.4e-14 81.6 53 75.5
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 3.2e-14 81.3 64 67.2
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 7.1e-14 80.1 51 74.5
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 9.3e-14 79.7 58 70.7
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 1.2e-13 79.3 63 66.7
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 1.2e-13 79.3 67 65.7
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 1.6e-13 79.0 52 73.1
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 2.1e-13 78.6 58 67.2
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 2.1e-13 78.6 54 70.4
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 4.6e-13 77.4 70 62.9
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 4.6e-13 77.4 57 68.4
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 4.6e-13 77.4 65 66.2
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 4.6e-13 77.4 55 67.3
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 4.6e-13 77.4 72 62.5
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 6.0e-13 77.0 62 67.7
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 6.0e-13 77.0 68 61.8
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 6.0e-13 77.0 63 65.1
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 6.0e-13 77.0 68 60.3
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 6.0e-13 77.0 64 64.1
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 7.9e-13 76.6 63 65.1
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 1.8e-12 75.5 57 66.7
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 1.8e-12 75.5 61 63.9
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 2.3e-12 75.1 53 66.0
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 2.3e-12 75.1 57 66.7
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 2.3e-12 75.1 57 66.7
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 2.3e-12 75.1 57 68.4
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 2.3e-12 75.1 55 69.1
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 2.3e-12 75.1 54 68.5
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 3.0e-12 74.7 69 58.0
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 3.0e-12 74.7 58 67.2
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 3.0e-12 74.7 62 64.5
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 3.9e-12 74.3 70 57.1
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 5.1e-12 73.9 62 67.7
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 5.1e-12 73.9 42 81.0
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 6.7e-12 73.6 55 69.1
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 6.7e-12 73.6 65 61.5
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 6.7e-12 73.6 60 63.3
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 6.7e-12 73.6 59 69.5
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 8.7e-12 73.2 61 65.6
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 1.1e-11 72.8 55 65.5
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 1.1e-11 72.8 42 81.0
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 1.1e-11 72.8 54 68.5
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 1.1e-11 72.8 58 65.5
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 1.5e-11 72.4 59 64.4
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 1.5e-11 72.4 59 64.4
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 1.5e-11 72.4 59 64.4
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 1.5e-11 72.4 62 62.9
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 2.5e-11 71.6 39 82.1
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 2.5e-11 71.6 60 63.3
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 3.3e-11 71.2 45 75.6
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 3.3e-11 71.2 45 75.6
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 3.3e-11 71.2 45 75.6
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 4.3e-11 70.9 62 62.9
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 4.3e-11 70.9 42 81.0
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 5.6e-11 70.5 61 57.4
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 5.6e-11 70.5 67 56.7
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 5.6e-11 70.5 58 65.5
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 5.6e-11 70.5 53 66.0
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 7.4e-11 70.1 55 63.6
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 7.4e-11 70.1 42 78.6
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 9.6e-11 69.7 42 81.0
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 2.1e-10 68.6 44 72.7
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 2.1e-10 68.6 59 64.4
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.1e-10 68.6 62 58.1
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.1e-10 68.6 62 58.1
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 3.7e-10 67.8 43 76.7
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 3.7e-10 67.8 47 68.1
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 4.8e-10 67.4 42 76.2
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 6.2e-10 67.0 41 80.5
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 1.8e-09 65.5 71 59.2
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 3.1e-09 64.7 40 75.0
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 3.1e-09 64.7 40 75.0
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 4.0e-09 64.3 40 72.5
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 5.3e-09 63.9 38 81.6
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 5.3e-09 63.9 38 81.6
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 5.3e-09 63.9 36 77.8
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 6.9e-09 63.5 62 53.2
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 9.0e-09 63.2 57 57.9
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 1.2e-08 62.8 38 76.3
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 1.2e-08 62.8 38 76.3
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 1.2e-08 62.8 37 81.1
EL10Ac4g10342 Beta vulgaris HOM05D007662 ORTHO05D009666 5.8e-08 60.5 57 52.6
Zm00001eb314380 Zea mays HOM05D007662 ORTHO05D009666 1.0e-07 59.7 47 59.6
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 2.2e-07 58.5 37 73.0
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 2.9e-07 58.2 37 73.0
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 1.1e-06 56.2 60 51.7
SEGI_07868 Sequoiadendron giganteum HOM05D007662 ORTHO05D009666 2.5e-06 55.1 44 54.5


User provided reference genes

Program Settings