Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2188 Acer truncatum HOM05D004559 ORTHO05D005283 1.7e-73 279.3 141 100.0
Atru.chr10.1255 Acer truncatum HOM05D004559 ORTHO05D005283 2.8e-60 235.3 140 85.0
Potri.004G131700 Populus trichocarpa HOM05D004559 ORTHO05D005283 1.3e-38 163.3 143 60.1
CDE02G1201 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 3.0e-38 162.2 147 57.8
PSO170G5325 Papaver somniferum HOM05D004559 ORTHO05D005283 1.1e-37 160.2 144 60.4
PSO407G0284 Papaver somniferum HOM05D004559 ORTHO05D005283 1.1e-37 160.2 144 60.4
PSO732G0295 Papaver somniferum HOM05D004559 ORTHO05D005283 1.5e-37 159.8 142 56.3
TAR626G0687 Trochodendron aralioides HOM05D004559 ORTHO05D005283 1.5e-37 159.8 143 57.3
Ah.14g086460 Amaranthus hybridus HOM05D001706 ORTHO05D005283 1.9e-37 159.5 143 56.6
Ciclev10014973m.g Citrus clementina HOM05D004559 ORTHO05D005283 1.9e-37 159.5 142 59.9
Peaxi162Scf01205g00119 Petunia axillaris HOM05D004559 ORTHO05D005283 4.3e-37 158.3 140 56.4
PGR083G1233 Punica granatum HOM05D004559 ORTHO05D005283 5.7e-37 157.9 144 59.0
CSS0018950 Camellia sinensis var. sinensis HOM05D004559 ORTHO05D005283 1.3e-36 156.8 143 55.9
Manes.02G132100 Manihot esculenta HOM05D004559 ORTHO05D005283 1.3e-36 156.8 143 56.6
Nn3g20736 Nelumbo nucifera HOM05D004559 ORTHO05D005283 1.6e-36 156.4 142 57.7
CAN.G650.2 Capsicum annuum HOM05D004559 ORTHO05D005283 2.1e-36 156.0 141 58.2
Nitab4.5_0001755g0010 Nicotiana tabacum HOM05D004559 ORTHO05D005283 2.1e-36 156.0 143 57.3
Solyc02g070580.1 Solanum lycopersicum HOM05D004559 ORTHO05D005283 2.1e-36 156.0 143 58.0
PGSC0003DMG400021157 Solanum tuberosum HOM05D004559 ORTHO05D005283 2.1e-36 156.0 141 56.0
MSTRG.14771 Avicennia marina HOM05D004559 ORTHO05D005283 3.7e-36 155.2 141 58.9
Gohir.D05G151700 Gossypium hirsutum HOM05D004559 ORTHO05D005283 4.8e-36 154.8 140 57.9
Sopen02g019670 Solanum pennellii HOM05D004559 ORTHO05D005283 4.8e-36 154.8 143 58.0
BcaB06g28777 Brassica carinata HOM05D004559 ORTHO05D005283 8.2e-36 154.1 140 57.1
Gohir.A05G149200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 8.2e-36 154.1 140 57.1
Duzib235G0428 Durio zibethinus HOM05D004559 ORTHO05D005283 1.1e-35 153.7 140 57.1
Oeu034159.1 Olea europaea HOM05D004559 ORTHO05D005283 1.1e-35 153.7 140 58.6
unitig_0.g931 Utricularia gibba HOM05D004559 ORTHO05D005283 1.1e-35 153.7 139 56.8
Rhsim13G0194400 Rhododendron simsii HOM05D004559 ORTHO05D005283 1.4e-35 153.3 145 57.9
HPP92_004048 Vanilla planifolia HOM05D004559 ORTHO05D005283 1.4e-35 153.3 138 55.8
EL10Ac8g19728 Beta vulgaris HOM05D004559 ORTHO05D005283 1.8e-35 152.9 143 53.1
Gohir.A05G149100 Gossypium hirsutum HOM05D004559 ORTHO05D005283 1.8e-35 152.9 140 56.4
Haze_05570 Corylus avellana HOM05D004559 ORTHO05D005283 2.4e-35 152.5 144 58.3
ECA236G2101 Erigeron canadensis HOM05D004559 ORTHO05D005283 2.4e-35 152.5 141 55.3
Eucgr.D00302 Eucalyptus grandis HOM05D004559 ORTHO05D005283 2.4e-35 152.5 143 56.6
Nitab4.5_0004023g0020 Nicotiana tabacum HOM05D004559 ORTHO05D005283 2.4e-35 152.5 143 55.9
COL.COLO4_31091 Corchorus olitorius HOM05D004559 ORTHO05D005283 3.1e-35 152.1 140 55.7
Duzib192G1007 Durio zibethinus HOM05D004559 ORTHO05D005283 3.1e-35 152.1 140 55.7
DCAR_027922 Daucus carota HOM05D004559 ORTHO05D005283 4.1e-35 151.8 138 55.1
HanXRQChr04g0118611 Helianthus annuus HOM05D004559 ORTHO05D005283 5.3e-35 151.4 141 55.3
PSO675G8299 Papaver somniferum HOM05D004559 ORTHO05D005283 5.3e-35 151.4 142 52.8
Thhalv10016552m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 6.9e-35 151.0 140 55.0
Manes.01G172800 Manihot esculenta HOM05D004559 ORTHO05D005283 6.9e-35 151.0 143 53.1
Sp4g16760 Schrenkiella parvula HOM05D004559 ORTHO05D005283 6.9e-35 151.0 140 57.1
Aa31LG10G6900 Aethionema arabicum HOM05D004559 ORTHO05D005283 1.2e-34 150.2 140 57.1
AT2G34500 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 1.2e-34 150.2 140 56.4
Gorai.009G155800 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.2e-34 150.2 140 56.4
BraA04t18146Z Brassica rapa HOM05D004559 ORTHO05D005283 1.5e-34 149.8 140 54.3
ClCG01G024550 Citrullus lanatus HOM05D004559 ORTHO05D005283 1.5e-34 149.8 141 57.4
Migut.H01366 Erythranthe guttata HOM05D004559 ORTHO05D005283 1.5e-34 149.8 138 55.1
Gorai.009G155600 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.5e-34 149.8 135 58.5
BcaB02g09537 Brassica carinata HOM05D004559 ORTHO05D005283 2.0e-34 149.4 140 56.4
Sed0018301 Sechium edule HOM05D004559 ORTHO05D005283 2.0e-34 149.4 141 57.4
Cc09_g09430 Coffea canephora HOM05D004559 ORTHO05D005283 2.6e-34 149.1 144 52.8
Thhalv10016547m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 3.4e-34 148.7 140 55.7
HanXRQChr15g0480071 Helianthus annuus HOM05D004559 ORTHO05D005283 3.4e-34 148.7 143 52.4
A04p26420 Brassica napus HOM05D004559 ORTHO05D005283 4.5e-34 148.3 140 54.3
C04p63830 Brassica napus HOM05D004559 ORTHO05D005283 4.5e-34 148.3 140 54.3
Ca_00552_v3 Cicer arietinum L. HOM05D004559 ORTHO05D005283 4.5e-34 148.3 141 55.3
Sc17g0004960 Simmondsia chinensis HOM05D004559 ORTHO05D005283 4.5e-34 148.3 146 54.8
AL4G30470 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 5.9e-34 147.9 140 55.0
CsaV3_6G051670 Cucumis sativus L. HOM05D004559 ORTHO05D005283 5.9e-34 147.9 141 56.0
Lj6g0026599 Lotus japonicus HOM05D004559 ORTHO05D005283 5.9e-34 147.9 141 53.9
MD05G1285000 Malus domestica HOM05D004559 ORTHO05D005283 5.9e-34 147.9 141 57.4
QL05p058743 Quercus lobata HOM05D004559 ORTHO05D005283 5.9e-34 147.9 146 55.5
HPP92_024037 Vanilla planifolia HOM05D004559 ORTHO05D005283 5.9e-34 147.9 136 58.1
arahy.Tifrunner.gnm1.ann1.64U7NV Arachis hypogaea HOM05D004559 ORTHO05D005283 7.6e-34 147.5 142 53.5
CiPaw.09G125100 Carya illinoinensis HOM05D004559 ORTHO05D005283 7.6e-34 147.5 143 54.5
MBI10_g02219_MAGBIO Magnolia biondii HOM05D004559 ORTHO05D005283 7.6e-34 147.5 143 52.4
Ah.09g232660 Amaranthus hybridus HOM05D004559 ORTHO05D005283 1.0e-33 147.1 141 53.9
arahy.Tifrunner.gnm1.ann1.5ZLV04 Arachis hypogaea HOM05D004559 ORTHO05D005283 1.0e-33 147.1 142 52.8
BcaC02g11512 Brassica carinata HOM05D004559 ORTHO05D005283 1.0e-33 147.1 138 55.8
C04p14530 Brassica napus HOM05D004559 ORTHO05D005283 1.0e-33 147.1 138 55.8
BolC4t27851H Brassica oleracea HOM05D004559 ORTHO05D005283 1.0e-33 147.1 140 53.6
THA.LOC104814293 Tarenaya hassleriana HOM05D004559 ORTHO05D005283 1.0e-33 147.1 140 53.6
Aqoxy4G00090 Aquilegia oxysepala HOM05D004559 ORTHO05D005283 1.3e-33 146.7 140 52.9
Cfa000955 Carpinus fangiana HOM05D004559 ORTHO05D005283 1.3e-33 146.7 144 55.6
MELO3C007140.2 Cucumis melo HOM05D004559 ORTHO05D005283 1.3e-33 146.7 141 56.0
Lsat_1_v5_gn_7_30060 Lactuca sativa HOM05D004559 ORTHO05D005283 1.7e-33 146.4 142 54.9
Prupe.4G079400 Prunus persica HOM05D004559 ORTHO05D005283 2.2e-33 146.0 144 55.6
TPR.G35511 Trifolium pratense HOM05D004559 ORTHO05D005283 2.9e-33 145.6 144 54.2
ATR0044G015 Amborella trichopoda HOM05D004559 ORTHO05D005283 3.8e-33 145.2 141 54.6
A05p11180 Brassica napus HOM05D004559 ORTHO05D005283 3.8e-33 145.2 138 55.1
BolC4t23036H Brassica oleracea HOM05D004559 ORTHO05D005283 3.8e-33 145.2 138 55.1
BraA05t20064Z Brassica rapa HOM05D004559 ORTHO05D005283 3.8e-33 145.2 138 55.1
CAN.G170.28 Capsicum annuum HOM05D004559 ORTHO05D005283 3.8e-33 145.2 141 53.9
CARHR128590 Cardamine hirsuta HOM05D004559 ORTHO05D005283 3.8e-33 145.2 140 55.7
Psat1g190840 Pisum sativum HOM05D004559 ORTHO05D005283 3.8e-33 145.2 141 53.9
FAN25G1224 Fragaria x ananassa HOM05D004559 ORTHO05D005283 6.5e-33 144.4 141 56.0
Carub.0004s1617 Capsella rubella HOM05D004559 ORTHO05D005283 8.5e-33 144.1 140 54.3
CARHR122010 Cardamine hirsuta HOM05D004559 ORTHO05D005283 8.5e-33 144.1 140 53.6
FAN11G0428 Fragaria x ananassa HOM05D004559 ORTHO05D005283 1.1e-32 143.7 143 54.5
Gorai.010G166000 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.1e-32 143.7 136 52.9
Phvul.006G163800 Phaseolus vulgaris HOM05D004559 ORTHO05D005283 1.1e-32 143.7 144 53.5
Os01g0211600 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 1.4e-32 143.3 141 53.2
RcHm_v2.0_Chr5g0013841 Rosa chinensis HOM05D004559 ORTHO05D005283 1.4e-32 143.3 141 57.4
VMungo0540G1851 Vigna mungo HOM05D004559 ORTHO05D005283 1.4e-32 143.3 144 53.5
AagrBONN_evm.TU.Sc2ySwM_344.5146 Anthoceros agrestis HOM05D004559 ORTHO05D005283 1.9e-32 142.9 142 52.8
BcaB06g28776 Brassica carinata HOM05D004559 ORTHO05D005283 1.9e-32 142.9 140 54.3
FvH4_3g05750 Fragaria vesca HOM05D004559 ORTHO05D005283 1.9e-32 142.9 141 55.3
Gohir.D06G142200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 2.5e-32 142.5 136 53.7
FAN21G2502 Fragaria x ananassa HOM05D004559 ORTHO05D005283 3.2e-32 142.1 141 55.3
Medtr2g019640 Medicago truncatula HOM05D004559 ORTHO05D005283 3.2e-32 142.1 141 53.9
Cpa.g.sc166.19 Carica papaya HOM05D004559 ORTHO05D005283 4.2e-32 141.7 141 55.3
Glyma.13G217400 Glycine max HOM05D004559 ORTHO05D005283 5.5e-32 141.4 141 53.9
Gorai.010G166100 Gossypium raimondii HOM05D004559 ORTHO05D005283 5.5e-32 141.4 136 52.2
FAN16G3572 Fragaria x ananassa HOM05D004559 ORTHO05D005283 9.3e-32 140.6 141 55.3
Mapoly0103s0038 Marchantia polymorpha HOM05D004559 ORTHO05D005283 9.3e-32 140.6 142 50.0
AL4G30460 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 1.2e-31 140.2 140 55.0
Lalb_Chr18g0055551 Lupinus albus HOM05D004559 ORTHO05D005283 1.2e-31 140.2 142 52.8
Os01g0210900 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 1.2e-31 140.2 141 51.8
Carub.0004s0985 Capsella rubella HOM05D004559 ORTHO05D005283 2.1e-31 139.4 140 50.7
Gohir.D05G151600 Gossypium hirsutum HOM05D004559 ORTHO05D005283 2.7e-31 139.0 136 55.9
AT2G28850 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 3.6e-31 138.7 140 50.7
Os01g0211200 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 6.1e-31 137.9 142 51.4
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 6.1e-31 137.9 141 50.4
Aqoxy1G04198 Aquilegia oxysepala HOM05D004559 ORTHO05D005283 7.9e-31 137.5 144 50.0
SGA_v2.0_scaffold106G30645 Striga asiatica HOM05D004559 ORTHO05D005283 1.0e-30 137.1 139 52.5
AT2G34490 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 2.3e-30 136.0 140 52.9
SMO367G0132 Selaginella moellendorffii HOM05D004559 ORTHO05D005283 2.3e-30 136.0 142 49.3
SEGI_11062 Sequoiadendron giganteum HOM05D004559 ORTHO05D005283 2.3e-30 136.0 143 51.7
Carub.0004s1616 Capsella rubella HOM05D004559 ORTHO05D005283 3.0e-30 135.6 140 52.1
PSO210G3360 Papaver somniferum HOM05D004559 ORTHO05D005283 3.9e-30 135.2 134 55.2
AL4G23390 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 5.1e-30 134.8 140 49.3
Glyma.15G095000 Glycine max HOM05D004559 ORTHO05D005283 5.1e-30 134.8 142 52.1
AT2G28860 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 1.5e-29 133.3 140 47.9
CARHR128580 Cardamine hirsuta HOM05D004559 ORTHO05D005283 1.5e-29 133.3 140 52.9
Os01g0211000 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 5.7e-29 131.3 141 51.1
Pp3c1_11690 Physcomitrium patens HOM05D004559 ORTHO05D005283 9.7e-29 130.6 141 50.4
Lj6g0003176 Lotus japonicus HOM05D004559 ORTHO05D005283 1.6e-28 129.8 141 48.9
AagrBONN_evm.TU.Sc2ySwM_344.1308 Anthoceros agrestis HOM05D004559 ORTHO05D005283 6.3e-28 127.9 143 47.6
Pp3c2_27810 Physcomitrium patens HOM05D004559 ORTHO05D005283 4.1e-27 125.2 141 48.9
TWI73G0246 Tripterygium wilfordii HOM05D004559 ORTHO05D005283 6.9e-27 124.4 143 48.3
Gohir.A06G137102 Gossypium hirsutum HOM05D004559 ORTHO05D005283 2.9e-25 119.0 109 54.1
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 2.5e-24 115.9 140 47.1
Mapoly0045s0151 Marchantia polymorpha HOM05D004559 ORTHO05D005283 4.2e-24 115.2 143 42.0
Lalb_Chr18g0055541 Lupinus albus HOM05D004559 ORTHO05D005283 9.4e-24 114.0 144 41.0
CDE09G0977 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 1.8e-22 109.8 119 52.1
AUR62018731 Chenopodium quinoa HOM05D004559 ORTHO05D005283 2.8e-20 102.4 140 42.1
AUR62007268 Chenopodium quinoa HOM05D004559 ORTHO05D005283 4.8e-20 101.7 140 42.9
Gohir.D05G151801 Gossypium hirsutum HOM05D004559 ORTHO05D005283 1.4e-19 100.1 121 48.8
Sabra04G0086100 Salix brachista HOM05D004559 ORTHO05D005283 2.6e-18 95.9 138 42.8
Thecc.06G152000 Theobroma cacao HOM05D004559 ORTHO05D005283 1.0e-17 94.0 140 42.1
Cre11.g467527 Chlamydomonas reinhardtii HOM05D004559 ORTHO05D005283 7.2e-16 87.8 142 38.0
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 4.8e-12 75.1 67 56.7
SalBow7G0183 Salvia bowleyana HOM05D004559 ORTHO05D005283 3.2e-08 62.4 59 57.6
HPP92_004055 Vanilla planifolia HOM05D004559 ORTHO05D005283 1.0e-06 57.4 53 54.7
PRCOL_00005015 Prasinoderma coloniale HOM05D004559 ORTHO05D005283 4.0e-06 55.5 140 30.7


User provided reference genes

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