Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 9.0e-128 460.3 239 100.0
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.8e-83 313.2 238 69.3
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 9.2e-72 274.2 224 66.1
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 8.6e-70 267.7 176 73.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 2.5e-69 266.2 181 70.7
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.5e-69 266.2 171 73.7
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 9.5e-69 264.2 169 73.4
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.6e-68 263.5 171 72.5
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 2.3e-67 259.6 227 61.2
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 4.9e-65 251.9 219 63.0
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 6.4e-65 251.5 232 59.5
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.1e-64 250.8 236 58.1
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 2.4e-64 249.6 232 59.5
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 5.4e-64 248.4 233 59.2
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 4.6e-63 245.4 232 59.1
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 7.8e-63 244.6 207 61.4
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 1.3e-62 243.8 209 62.2
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 1.3e-62 243.8 209 62.2
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.3e-62 243.8 209 62.2
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 3.3e-61 239.2 235 57.0
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 7.3e-61 238.0 207 61.4
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 7.3e-61 238.0 216 59.7
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 9.9e-58 227.6 239 54.4
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 8.3e-57 224.6 225 54.2
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.1e-56 224.2 235 50.6
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.1e-56 224.2 170 63.5
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 3.2e-56 222.6 170 62.9
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 4.1e-56 222.2 223 53.8
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 3.5e-55 219.2 177 58.8
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 6.0e-55 218.4 233 51.9
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.0e-54 217.6 226 52.7
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 3.9e-54 215.7 229 52.0
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 3.9e-54 215.7 235 51.9
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 4.3e-53 212.2 224 50.0
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 1.4e-51 207.2 233 53.2
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 2.4e-51 206.5 225 52.4
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 3.4e-50 202.6 188 51.6
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 1.3e-49 200.7 235 46.8
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 5.4e-48 195.3 178 52.2
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 1.2e-47 194.1 229 47.2
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.2e-47 194.1 218 49.1
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 1.6e-47 193.7 219 49.3
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 2.7e-47 193.0 218 49.1
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 3.5e-47 192.6 228 46.1
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 4.6e-47 192.2 176 54.5
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.3e-46 189.9 191 47.6
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 3.0e-46 189.5 214 49.5
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 8.7e-46 188.0 233 45.5
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 3.3e-45 186.0 226 47.8
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 7.3e-45 184.9 173 53.2
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 2.8e-44 183.0 227 45.8
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 4.7e-44 182.2 173 52.0
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 1.1e-43 181.0 227 45.4
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 1.4e-43 180.6 228 42.5
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 4.0e-43 179.1 166 52.4
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 5.2e-43 178.7 227 44.5
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 9.0e-43 177.9 231 45.0
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 1.5e-42 177.2 202 47.0
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 2.0e-42 176.8 190 46.3
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 2.0e-42 176.8 221 46.2
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 4.4e-42 175.6 238 45.0
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 3.8e-41 172.6 165 50.9
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 1.1e-40 171.0 209 45.0
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 1.4e-40 170.6 228 44.7
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 1.4e-40 170.6 221 43.0
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 1.9e-40 170.2 195 47.2
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 5.4e-40 168.7 219 42.9
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 5.4e-40 168.7 216 47.7
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 1.6e-39 167.2 225 42.2
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 2.1e-39 166.8 223 43.9
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 2.1e-39 166.8 216 43.1
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 4.6e-39 165.6 144 52.1
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 6.0e-39 165.2 226 42.9
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 7.8e-39 164.9 247 42.9
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 7.8e-39 164.9 221 44.3
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.3e-38 163.3 142 52.1
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.5e-37 160.6 250 40.8
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 3.3e-37 159.5 224 44.2
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 4.3e-37 159.1 141 55.3
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 5.6e-37 158.7 169 47.9
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 9.6e-37 157.9 171 48.5
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 1.6e-36 157.1 138 55.8
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 6.2e-36 155.2 144 51.4
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 1.1e-35 154.5 145 53.1
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 2.4e-35 153.3 224 40.2
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 2.6e-34 149.8 223 38.1
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 1.7e-33 147.1 170 42.4
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.9e-33 146.4 141 51.1
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 9.3e-32 141.4 120 55.0
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.1e-29 134.4 181 43.6
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 5.6e-29 132.1 173 41.6
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 9.6e-29 131.3 126 53.2
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 9.6e-29 131.3 299 31.1
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 3.7e-28 129.4 110 53.6
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 1.1e-24 117.9 365 28.8
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 3.0e-22 109.8 118 48.3
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.8e-19 100.5 176 40.3
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 7.1e-16 88.6 166 31.9
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 6.7e-14 82.0 92 45.7
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 7.4e-13 78.6 119 44.5
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 4.8e-12 75.9 163 27.0
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 9.0e-11 71.6 149 25.5
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 1.5e-10 70.9 209 24.4
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 1.5e-10 70.9 56 55.4
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 2.6e-10 70.1 168 24.4
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 4.5e-10 69.3 207 24.2
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 1.3e-09 67.8 207 25.6
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.7e-09 67.4 166 26.5
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.9e-08 63.9 59 49.2


User provided reference genes

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