Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 2.6e-100 369.4 299 100.0
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 1.9e-42 177.2 332 43.1
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 7.8e-36 155.2 305 44.3
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.7e-35 154.1 307 43.0
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.0e-35 152.5 305 44.3
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 2.5e-34 150.2 329 43.8
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 5.6e-34 149.1 335 49.9
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.9e-32 141.7 300 46.7
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.4e-31 139.4 298 50.7
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.8e-31 139.0 298 50.3
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.7e-30 137.5 297 37.0
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.2e-28 131.3 312 38.5
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.2e-28 131.3 296 38.2
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-28 131.0 312 39.7
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 4.6e-28 129.4 295 38.6
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 6.0e-28 129.0 296 37.8
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 6.0e-28 129.0 290 42.4
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.3e-27 127.9 312 40.1
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.7e-27 127.5 322 47.5
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.0e-27 126.7 289 38.1
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 3.0e-27 126.7 328 34.1
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 5.1e-27 125.9 328 42.7
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.5e-26 123.6 317 39.7
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 4.3e-26 122.9 284 37.3
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 4.3e-26 122.9 332 42.8
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.2e-25 121.3 284 38.0
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 2.1e-25 120.6 284 37.3
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.1e-24 118.2 340 35.0
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 4.0e-24 116.3 326 34.4
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.5e-23 114.4 298 32.9
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 2.0e-23 114.0 291 38.1
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.0e-23 114.0 300 42.7
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 3.4e-23 113.2 319 36.7
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.9e-22 110.2 294 35.7
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.7e-22 109.8 170 47.1
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 1.2e-20 104.8 303 37.6
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 2.7e-20 103.6 301 38.2
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.7e-19 100.9 294 38.8
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 2.3e-19 100.5 297 31.6
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 3.0e-19 100.1 288 35.4
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 5.1e-19 99.4 303 42.9
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 5.1e-19 99.4 307 40.4
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 2.5e-18 97.1 178 41.6
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 3.3e-18 96.7 286 43.4
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 7.3e-18 95.5 172 49.4
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 9.5e-18 95.1 170 45.3
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 9.5e-18 95.1 283 36.7
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.2e-17 94.7 296 35.1
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.6e-17 94.4 299 28.8
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.6e-17 94.4 303 39.6
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.1e-17 94.0 228 32.9
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 3.6e-17 93.2 256 32.8
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 3.6e-17 93.2 256 32.8
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 4.7e-17 92.8 276 34.8
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 6.2e-17 92.4 185 42.7
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.1e-17 92.0 228 32.9
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 1.1e-16 91.7 311 41.5
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.4e-16 91.3 204 46.6
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.8e-16 90.9 181 49.7
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.8e-16 90.9 228 33.3
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.8e-16 90.9 286 38.8
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 2.4e-16 90.5 171 48.5
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 3.1e-16 90.1 299 30.8
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.1e-16 90.1 178 43.8
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 5.2e-16 89.4 270 45.9
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 6.8e-16 89.0 295 33.9
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.9e-16 88.6 204 46.1
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.9e-16 88.6 204 46.1
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 8.9e-16 88.6 188 43.6
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.5e-15 87.8 205 44.9
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 2.6e-15 87.0 291 35.4
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 3.4e-15 86.7 306 39.2
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 4.4e-15 86.3 298 30.5
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 4.4e-15 86.3 291 36.4
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 4.4e-15 86.3 157 36.3
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 7.6e-15 85.5 313 32.9
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.3e-14 84.7 293 31.4
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 1.3e-14 84.7 181 50.3
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 2.9e-14 83.6 173 37.6
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 2.9e-14 83.6 269 38.3
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 3.8e-14 83.2 189 42.9
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 4.9e-14 82.8 282 31.6
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.4e-13 81.3 161 42.9
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.4e-13 81.3 203 35.0
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.4e-13 81.3 306 29.1
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.9e-13 80.9 162 42.6
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 2.4e-13 80.5 319 44.8
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 3.2e-13 80.1 161 39.1
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 3.2e-13 80.1 244 38.9
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 3.2e-13 80.1 295 33.9
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 4.2e-13 79.7 292 36.0
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 5.4e-13 79.3 162 38.3
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.4e-13 79.3 202 41.1
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 9.2e-13 78.6 279 36.6
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 9.2e-13 78.6 279 36.6
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 1.2e-12 78.2 273 35.9
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 1.6e-12 77.8 162 38.3
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 2.7e-12 77.0 279 36.2
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 2.7e-12 77.0 179 36.3
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 2.7e-12 77.0 164 34.8
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 3.5e-12 76.6 173 32.4
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 4.6e-12 76.3 168 37.5
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 4.6e-12 76.3 168 37.5
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 6.0e-12 75.9 271 34.7
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 6.0e-12 75.9 181 37.6
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 1.0e-11 75.1 306 31.4
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 1.7e-11 74.3 277 35.7
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 2.3e-11 73.9 168 36.9
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 2.3e-11 73.9 159 38.4
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 3.0e-11 73.6 156 37.8
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 3.0e-11 73.6 156 37.8
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 3.0e-11 73.6 156 37.8
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 3.9e-11 73.2 178 33.7
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 1.1e-10 71.6 286 31.1
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 4.3e-10 69.7 297 35.0
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 4.3e-10 69.7 170 32.9
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 2.8e-09 67.0 170 47.6
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 4.8e-09 66.2 168 31.5
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 1.4e-08 64.7 303 30.7
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 1.4e-08 64.7 296 40.9
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 5.3e-08 62.8 162 50.0
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 9.0e-08 62.0 302 41.7
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 1.2e-07 61.6 176 42.6
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 1.5e-07 61.2 108 43.5
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.3e-06 58.2 297 34.3
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.7e-06 57.8 169 29.6
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 2.9e-06 57.0 170 42.9
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 8.4e-06 55.5 180 28.3
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 8.4e-06 55.5 177 28.2


User provided reference genes

Program Settings