Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 1.1e-161 573.2 281 100.0
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 3.0e-106 389.0 235 80.0
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 1.4e-98 363.6 267 64.8
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 6.7e-98 361.3 249 67.5
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 2.0e-97 359.8 247 66.8
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 3.3e-97 359.0 247 66.8
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 1.7e-96 356.7 214 76.6
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 6.3e-96 354.8 214 76.2
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 9.1e-95 350.9 228 71.9
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 2.0e-94 349.7 249 66.3
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 7.7e-94 347.8 245 67.8
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 1.0e-93 347.4 240 70.0
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 6.5e-93 344.7 262 61.8
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.4e-92 343.6 238 67.2
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.1e-91 339.7 213 73.2
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 1.0e-90 337.4 219 70.3
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 1.4e-90 337.0 217 71.4
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 1.4e-90 337.0 219 70.8
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 2.3e-90 336.3 219 70.3
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 2.3e-90 336.3 262 62.2
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 3.0e-90 335.9 264 60.6
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 2.0e-89 333.2 213 71.4
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 2.0e-89 333.2 233 68.7
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 9.7e-89 330.9 197 75.6
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 1.3e-88 330.5 212 70.8
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 2.2e-88 329.7 233 67.4
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 2.2e-88 329.7 251 62.9
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 3.7e-88 328.9 237 65.8
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 6.3e-88 328.2 217 67.3
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 1.1e-87 327.4 217 67.7
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 1.4e-87 327.0 209 69.9
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 3.1e-87 325.9 210 69.5
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 9.1e-87 324.3 253 62.1
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 4.5e-86 322.0 221 67.4
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 5.9e-86 321.6 183 78.1
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 7.7e-86 321.2 248 61.3
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 2.9e-85 319.3 260 58.1
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 1.1e-84 317.4 247 63.6
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.5e-84 315.1 229 62.4
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 7.2e-84 314.7 254 59.1
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 9.4e-84 314.3 235 64.7
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 9.4e-84 314.3 240 62.5
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.2e-83 313.9 232 65.1
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 6.1e-83 311.6 190 74.2
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.4e-82 310.5 214 64.0
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.0e-82 309.3 201 68.7
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 6.7e-82 308.1 218 65.1
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 8.8e-82 307.8 201 68.7
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.2e-81 307.4 201 68.7
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 2.6e-81 306.2 183 74.3
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 4.4e-81 305.4 227 63.4
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 5.7e-81 305.1 202 68.3
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 9.7e-81 304.3 198 69.2
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.7e-80 303.5 201 67.7
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.7e-80 303.5 178 77.5
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 1.7e-80 303.5 253 58.5
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 3.7e-80 302.4 200 68.5
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 6.3e-80 301.6 212 64.2
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 1.1e-79 300.8 196 66.8
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 9.1e-79 297.7 227 59.9
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 2.7e-78 296.2 218 62.8
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.5e-78 295.8 207 61.4
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 5.9e-78 295.0 212 62.3
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-77 293.9 229 59.0
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-77 293.5 226 60.6
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.7e-77 293.5 200 65.5
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 3.8e-77 292.4 219 61.2
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 5.0e-77 292.0 201 66.2
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.5e-76 290.4 226 60.2
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.5e-76 290.4 226 60.2
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.9e-76 290.0 194 62.9
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 2.5e-76 289.7 201 65.7
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 4.2e-76 288.9 226 59.7
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 9.4e-76 287.7 188 67.6
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 9.4e-76 287.7 231 59.3
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.2e-75 287.3 194 64.9
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.2e-75 287.3 238 56.7
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-75 287.0 201 64.2
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-75 287.0 201 64.2
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.1e-75 286.6 226 59.3
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 2.1e-75 286.6 192 66.7
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 2.7e-75 286.2 229 59.0
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 3.6e-75 285.8 192 66.1
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.7e-75 285.4 194 66.0
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 4.7e-75 285.4 213 60.6
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.8e-74 283.5 226 58.8
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-74 283.5 226 58.8
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.3e-74 283.1 226 59.7
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 4.0e-74 282.3 201 63.2
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 8.8e-74 281.2 219 60.3
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 8.8e-74 281.2 226 59.3
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 1.2e-73 280.8 209 61.2
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.6e-73 279.6 226 60.2
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.6e-73 279.6 192 62.5
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 4.4e-73 278.9 203 60.1
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.7e-72 276.9 195 62.6
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 2.2e-72 276.6 192 64.1
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 3.7e-72 275.8 194 63.4
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 3.7e-72 275.8 226 56.6
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 4.8e-72 275.4 259 56.0
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.8e-72 275.4 218 59.6
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-70 270.8 188 64.4
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 1.6e-70 270.4 210 59.5
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 3.5e-70 269.2 185 65.4
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 4.5e-70 268.9 216 58.8
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 7.7e-70 268.1 185 66.5
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 7.7e-70 268.1 193 61.7
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 7.7e-70 268.1 193 61.7
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 7.7e-70 268.1 193 61.7
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 1.0e-69 267.7 219 58.4
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 2.9e-69 266.2 194 59.8
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 3.8e-69 265.8 225 56.4
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 2.5e-68 263.1 195 60.5
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.2e-68 262.7 230 55.2
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 4.2e-68 262.3 193 60.6
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 4.2e-68 262.3 193 60.6
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 4.0e-66 255.8 182 67.6
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 6.8e-66 255.0 287 46.3
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 1.5e-65 253.8 230 54.8
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.5e-65 253.8 193 63.7
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 9.8e-65 251.1 203 57.6
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 3.1e-63 246.1 178 62.4
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 7.0e-63 245.0 197 56.3
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 9.2e-63 244.6 229 52.0
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 1.6e-62 243.8 192 55.7
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 3.5e-62 242.7 207 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 2.9e-61 239.6 207 52.7
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.1e-60 237.7 158 65.8
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 7.3e-60 235.0 209 55.0
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 8.0e-59 231.5 178 60.1
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 2.3e-58 229.9 144 72.2
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 5.2e-58 228.8 200 53.0
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.5e-57 227.3 217 52.1
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-55 221.1 177 59.3
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.4e-55 220.7 152 69.1
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 5.4e-55 218.8 151 66.9
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 4.9e-48 195.7 184 48.4
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 1.3e-45 187.6 123 69.1
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 3.6e-43 179.5 120 70.8
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 6.4e-40 168.7 116 64.7
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 3.9e-37 159.5 204 40.7
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 1.8e-34 150.6 212 39.2
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 9.9e-33 144.8 197 38.6
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 2.9e-32 143.3 175 44.6
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 2.9e-32 143.3 175 44.6
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 2.9e-32 143.3 175 44.6
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.7e-29 134.0 183 43.2
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 5.1e-29 132.5 279 32.6
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.1e-28 131.3 85 67.1
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.3e-28 129.4 133 51.1
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.6e-28 129.0 86 65.1
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 2.1e-27 127.1 209 37.3
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.7e-27 125.9 96 59.4
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.4e-26 124.4 101 59.4
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 6.0e-22 109.0 111 48.6
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 7.8e-22 108.6 77 62.3
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.3e-21 107.8 75 62.7
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-20 104.8 216 32.4
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.5e-20 104.4 74 59.5
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 4.0e-18 96.3 151 37.1
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 6.9e-18 95.5 79 57.0
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 9.0e-18 95.1 170 37.1
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 9.9e-17 91.7 154 35.7
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 4.9e-16 89.4 148 35.8
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 8.4e-16 88.6 55 63.6
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 5.6e-12 75.9 45 75.6
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 1.7e-08 64.3 44 61.4
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 3.2e-07 60.1 133 32.3


User provided reference genes

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