Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 6.7e-134 480.7 247 100.0
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.6e-63 246.9 154 84.4
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 4.0e-62 242.3 167 78.4
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 5.2e-62 241.9 169 78.1
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 6.8e-62 241.5 163 79.1
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 8.9e-62 241.1 158 81.0
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 8.9e-62 241.1 165 80.6
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 2.6e-61 239.6 169 78.1
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 2.6e-61 239.6 164 76.8
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 5.8e-61 238.4 174 75.3
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 5.8e-61 238.4 167 79.0
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 9.8e-61 237.7 174 75.3
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 9.8e-61 237.7 166 77.7
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 2.2e-60 236.5 170 75.9
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.9e-60 236.1 169 75.7
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.7e-60 235.7 168 77.4
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 3.7e-60 235.7 173 74.6
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.3e-60 234.6 162 78.4
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 8.3e-60 234.6 170 75.3
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.2e-59 232.6 169 74.6
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 3.2e-59 232.6 182 70.3
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 3.2e-59 232.6 162 77.8
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 5.4e-59 231.9 170 74.1
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.2e-58 230.7 167 75.4
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.2e-58 230.7 166 75.3
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.1e-58 229.9 179 69.3
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 2.1e-58 229.9 151 80.1
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 2.1e-58 229.9 166 74.1
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.7e-58 229.6 162 73.5
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 3.5e-58 229.2 169 74.0
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 6.0e-58 228.4 162 73.5
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 6.0e-58 228.4 167 73.7
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.7e-57 226.9 167 74.3
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 3.0e-57 226.1 167 71.9
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 3.0e-57 226.1 168 73.2
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.0e-57 226.1 162 74.1
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 6.6e-57 224.9 167 70.7
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 6.6e-57 224.9 166 72.9
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.1e-56 224.2 184 67.4
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.5e-56 223.8 167 70.1
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 4.3e-56 222.2 133 82.7
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.3e-56 222.2 167 70.1
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 4.3e-56 222.2 160 71.9
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 5.6e-56 221.9 166 74.1
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.6e-56 221.9 151 76.8
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 7.3e-56 221.5 135 81.5
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 9.5e-56 221.1 167 71.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 9.5e-56 221.1 192 65.1
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 9.5e-56 221.1 167 70.7
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.1e-55 219.9 164 70.1
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.8e-55 219.5 162 71.0
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 6.2e-55 218.4 166 72.9
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 8.1e-55 218.0 165 71.5
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.1e-54 217.6 133 82.0
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.1e-54 217.6 169 69.2
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.1e-54 217.6 169 69.2
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.4e-54 217.2 167 69.5
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 2.3e-54 216.5 174 70.1
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 4.0e-54 215.7 156 71.8
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 6.8e-54 214.9 129 82.9
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 6.8e-54 214.9 185 65.4
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.2e-53 214.2 170 67.1
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.5e-53 213.8 156 69.9
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.0e-53 213.4 166 69.9
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.0e-53 213.4 165 68.5
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 2.0e-53 213.4 150 74.0
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 2.6e-53 213.0 168 69.6
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 4.4e-53 212.2 152 73.7
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 4.4e-53 212.2 156 69.9
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 5.8e-53 211.8 169 68.0
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 5.8e-53 211.8 138 77.5
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.3e-52 210.7 137 76.6
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.7e-52 210.3 169 66.9
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.7e-52 210.3 169 66.9
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.2e-52 209.9 167 68.9
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 3.7e-52 209.1 167 68.3
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 3.7e-52 209.1 167 68.3
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.9e-52 208.8 175 66.9
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 6.4e-52 208.4 137 75.9
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 6.4e-52 208.4 169 65.7
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 8.4e-52 208.0 175 66.9
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 8.4e-52 208.0 157 70.1
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.1e-51 207.6 163 66.9
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.1e-51 207.6 164 67.7
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.4e-51 207.2 169 66.9
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.4e-51 207.2 165 67.3
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.4e-51 207.2 170 65.9
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.4e-51 207.2 143 72.7
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 2.4e-51 206.5 166 68.1
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.4e-51 206.5 158 69.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.4e-51 206.5 157 69.4
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 2.4e-51 206.5 146 71.2
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 2.4e-51 206.5 178 64.6
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 2.4e-51 206.5 178 64.6
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.4e-51 206.5 178 64.6
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 5.4e-51 205.3 169 65.7
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 5.4e-51 205.3 154 67.5
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 9.2e-51 204.5 159 67.9
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.2e-50 204.1 161 67.7
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 1.2e-50 204.1 163 65.0
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.6e-50 203.8 166 66.3
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.6e-50 203.8 194 59.3
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 2.1e-50 203.4 160 66.2
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 2.1e-50 203.4 163 66.3
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 2.7e-50 203.0 159 67.9
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.5e-48 197.2 137 72.3
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.5e-48 197.2 159 67.3
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.9e-48 196.8 155 64.5
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 2.5e-48 196.4 157 63.7
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 5.6e-48 195.3 148 67.6
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 7.3e-48 194.9 155 66.5
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 7.3e-48 194.9 157 64.3
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 9.6e-48 194.5 133 75.2
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.1e-47 193.4 158 69.0
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.6e-47 192.6 156 66.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 4.7e-47 192.2 163 62.0
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.8e-46 190.3 163 66.9
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 2.4e-46 189.9 130 70.8
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 2.4e-46 189.9 165 62.4
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 4.0e-46 189.1 172 61.0
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 2.0e-45 186.8 180 58.3
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 3.4e-45 186.0 157 60.5
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 4.4e-45 185.7 154 64.3
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.3e-44 184.1 165 60.6
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.4e-43 179.9 138 63.0
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.0e-41 172.9 135 72.6
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 3.0e-41 172.9 165 58.8
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 4.3e-40 169.1 144 63.9
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.3e-39 167.5 173 58.4
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.8e-38 163.7 132 65.2
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 6.9e-38 161.8 149 60.4
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 9.0e-38 161.4 166 59.0
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 9.0e-38 161.4 120 64.2
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.2e-37 161.0 158 57.6
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 2.2e-36 156.8 169 56.2
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 2.2e-36 156.8 169 56.2
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.0e-33 146.4 126 58.7
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 6.6e-33 145.2 93 74.2
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.3e-32 142.9 127 60.6
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 4.3e-32 142.5 86 77.9
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 7.3e-32 141.7 127 55.1
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.3e-32 141.7 127 60.6
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 9.6e-32 141.4 140 51.4
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 9.6e-32 141.4 129 60.5
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 4.8e-31 139.0 132 54.5
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.2e-31 138.7 127 61.4
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 4.5e-29 132.5 82 74.4
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 4.9e-28 129.0 161 49.1
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 8.4e-28 128.3 124 53.2
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.1e-27 127.9 84 70.2
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 4.3e-24 115.9 95 63.2
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 9.6e-24 114.8 85 70.6
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.8e-23 113.2 155 39.4
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.8e-23 113.2 155 39.4
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.5e-16 90.9 83 62.7
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 2.4e-14 83.6 161 37.3
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.2e-13 81.3 58 63.8
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 8.7e-09 65.1 177 37.9
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 4.3e-08 62.8 78 53.8


User provided reference genes

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