Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 2.4e-275 951.4 453 100.0
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 2.4e-275 951.4 453 100.0
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.1e-251 872.8 448 91.3
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 2.5e-251 871.7 453 90.3
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.5e-248 862.4 448 90.2
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.3e-248 861.3 450 89.8
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 5.7e-248 860.5 451 89.6
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.7e-247 859.0 450 89.6
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.7e-247 859.0 451 87.8
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 6.3e-247 857.1 451 89.1
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.4e-246 855.9 453 88.5
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.4e-246 855.9 453 87.6
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.4e-246 855.1 451 89.1
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 6.9e-246 853.6 450 88.7
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 9.1e-246 853.2 446 90.6
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.2e-245 852.8 451 88.5
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 4.5e-245 850.9 445 89.9
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 7.7e-245 850.1 446 89.9
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.2e-244 848.6 448 89.7
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 6.5e-244 847.0 453 87.4
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.4e-243 845.9 448 89.3
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 2.5e-243 845.1 450 86.9
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.2e-243 843.6 448 88.2
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 2.7e-242 841.6 448 86.8
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 3.6e-242 841.3 447 86.6
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 6.1e-242 840.5 447 88.1
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.0e-241 839.7 448 87.7
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.0e-241 839.7 450 88.2
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.3e-241 838.6 451 87.4
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.9e-241 837.8 448 87.9
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.9e-241 837.8 446 88.3
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 3.9e-241 837.8 451 86.0
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.2e-241 837.4 446 89.5
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 8.8e-241 836.6 450 87.1
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 2.0e-240 835.5 448 87.5
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.6e-240 835.1 451 86.7
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 2.6e-240 835.1 443 88.3
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 5.7e-240 833.9 450 87.1
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.7e-239 832.4 453 85.4
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.7e-239 831.2 448 86.4
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 4.8e-239 830.9 446 88.1
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 3.1e-238 828.2 448 86.6
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.1e-238 826.6 445 86.1
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-237 826.2 448 85.7
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.6e-237 825.9 472 82.6
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 4.5e-237 824.3 453 85.2
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.0e-236 823.2 528 75.9
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.7e-236 822.4 448 85.5
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 2.2e-236 822.0 448 85.5
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.9e-236 821.6 453 84.3
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 3.8e-236 821.2 453 83.9
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 3.8e-236 821.2 453 83.9
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 5.0e-236 820.8 453 84.8
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 6.5e-236 820.5 458 84.3
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.5e-235 819.3 448 85.3
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 5.5e-235 817.4 443 85.6
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 7.2e-235 817.0 448 85.3
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 2.1e-234 815.5 446 85.0
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 2.7e-234 815.1 448 85.5
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 2.7e-234 815.1 448 85.9
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 3.6e-234 814.7 448 86.2
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 4.7e-234 814.3 443 86.0
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 6.1e-234 813.9 452 84.5
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 8.0e-234 813.5 443 85.6
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 8.0e-234 813.5 448 85.5
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 2.3e-233 812.0 443 85.8
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 4.0e-233 811.2 453 84.8
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 5.2e-233 810.8 451 84.3
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 6.7e-233 810.4 447 84.1
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 8.8e-233 810.1 447 84.3
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 2.0e-232 808.9 448 84.4
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 2.0e-232 808.9 448 84.4
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.6e-232 808.5 452 83.6
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 7.5e-232 807.0 453 83.4
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.7e-231 805.8 447 84.6
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.2e-231 805.4 448 84.8
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.2e-231 805.4 453 83.4
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.8e-231 805.1 453 83.4
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.7e-231 804.7 506 76.3
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 3.7e-231 804.7 446 84.3
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 4.8e-231 804.3 448 84.8
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 8.2e-231 803.5 448 84.4
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.1e-230 803.1 447 83.9
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.4e-230 802.7 450 83.6
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.4e-230 802.7 448 84.4
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.4e-230 802.0 448 83.9
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 7.0e-230 800.4 453 83.2
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 7.0e-230 800.4 451 82.9
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.6e-229 799.3 453 82.8
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.7e-229 798.5 445 84.9
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 7.7e-229 797.0 445 84.7
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.7e-228 795.8 496 77.4
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 2.9e-228 795.0 448 83.3
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 5.0e-228 794.3 448 82.8
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 6.5e-228 793.9 453 83.0
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 6.5e-228 793.9 448 82.8
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 6.5e-228 793.9 448 82.8
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 8.5e-228 793.5 448 83.3
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.5e-227 792.7 483 78.9
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.7e-223 779.2 446 80.9
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 4.8e-223 777.7 442 84.4
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 7.7e-221 770.4 447 81.4
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 8.6e-220 766.9 446 79.6
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 8.0e-218 760.4 447 81.0
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.8e-217 759.2 446 79.6
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 6.8e-217 757.3 518 72.6
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.8e-214 749.2 446 81.6
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 3.1e-214 748.4 407 85.7
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 7.0e-214 747.3 448 79.7
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.1e-203 713.4 464 75.4
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.1e-203 713.4 380 87.6
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 7.3e-203 710.7 443 76.3
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.9e-199 698.7 441 73.9
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 2.4e-198 695.7 457 74.8
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.7e-197 692.2 377 83.8
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 1.9e-195 686.0 445 72.1
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.6e-194 682.9 383 83.3
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.2e-189 666.8 451 73.2
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 8.1e-178 627.5 334 88.9
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.0e-177 625.2 450 71.1
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.3e-164 583.6 428 68.9
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 2.1e-157 559.7 297 89.2
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.5e-155 552.7 461 64.0
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.5e-155 552.7 295 88.5
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 2.5e-150 536.2 316 76.9
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 6.1e-141 505.0 283 82.7
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.0e-135 487.6 448 58.3
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.6e-123 446.4 374 58.8
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.0e-119 434.5 295 69.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.0e-104 383.6 275 68.4
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 5.6e-94 349.0 199 78.9
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 6.0e-80 302.4 162 86.4
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.4e-68 264.6 140 87.9
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.4e-68 263.8 145 80.7
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.2e-68 262.7 270 50.0
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-67 261.2 150 79.3
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 4.9e-66 256.1 198 66.2
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.6e-64 251.1 146 80.1
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.6e-63 245.7 148 73.6
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 5.6e-62 242.7 148 75.0
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.0e-60 236.5 194 60.3
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.1e-52 211.8 135 75.6
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 3.5e-48 196.8 111 84.7
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 3.3e-46 190.3 138 65.2
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 2.3e-39 167.5 132 62.1
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 3.3e-38 163.7 111 69.4
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.4e-25 121.7 73 75.3
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 9.4e-25 119.0 74 74.3
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.1e-24 116.3 78 71.8
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.4e-23 115.2 71 74.6
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 8.8e-23 112.5 55 90.9
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.5e-22 111.7 70 72.9
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 4.8e-21 106.7 66 71.2
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 9.1e-20 102.4 80 61.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.9e-17 94.7 83 55.4
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.5e-14 85.1 67 58.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 4.4e-14 83.6 71 56.3
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.7e-13 81.6 56 66.1
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 4.8e-13 80.1 426 25.4
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.1e-12 77.0 46 73.9
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 7.7e-11 72.8 44 75.0
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 4.2e-09 67.0 36 80.6


User provided reference genes

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