Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 1.0e-263 912.9 471 100.0
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.1e-213 745.7 470 79.1
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.7e-210 736.1 474 82.9
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 3.0e-207 725.3 479 76.8
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.1e-206 723.4 472 78.0
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 7.3e-206 720.7 472 78.0
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 3.1e-204 715.3 471 77.3
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 4.0e-204 714.9 471 77.3
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.2e-203 713.4 471 77.1
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 2.0e-203 712.6 465 77.2
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.4e-203 711.8 471 76.4
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.9e-202 708.8 471 76.9
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 3.8e-202 708.4 472 75.4
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.7e-199 699.5 471 75.8
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.7e-199 699.5 472 75.4
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.6e-198 693.7 473 74.6
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.2e-197 693.3 473 75.3
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 4.0e-196 688.3 471 73.9
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.0e-196 688.3 473 74.4
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.3e-194 683.3 472 73.5
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.2e-194 682.6 473 74.0
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.4e-193 679.9 484 73.8
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.2e-193 678.7 473 74.0
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 7.1e-193 677.6 473 74.0
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 7.1e-193 677.6 474 73.2
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 2.1e-192 676.0 477 72.5
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 6.0e-192 674.5 478 75.7
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.3e-191 672.5 473 74.4
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 5.6e-190 667.9 472 72.2
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.6e-189 666.4 477 72.5
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 6.2e-189 664.5 472 72.2
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 8.1e-189 664.1 453 75.1
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 2.4e-188 662.5 471 72.6
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 5.3e-188 661.4 471 72.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 5.3e-188 661.4 471 72.2
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.2e-187 660.2 471 73.0
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.5e-187 659.8 472 72.0
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 3.4e-187 658.7 473 72.3
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.7e-186 656.4 471 71.1
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 4.9e-186 654.8 473 71.0
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 4.2e-185 651.7 471 70.7
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.3e-183 646.7 466 71.2
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.3e-183 646.7 472 70.6
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.1e-182 643.7 478 69.7
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 1.1e-182 643.7 471 71.3
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.5e-182 643.3 467 70.4
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 7.4e-182 641.0 471 70.9
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 2.4e-180 636.0 467 69.8
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.2e-179 633.6 473 68.7
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.2e-179 633.6 505 65.9
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.7e-178 629.8 469 68.9
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 2.9e-178 629.0 473 68.9
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 4.9e-178 628.2 473 68.7
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 4.9e-178 628.2 451 70.3
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 6.4e-178 627.9 473 68.5
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 6.4e-178 627.9 471 69.4
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.1e-177 627.1 502 67.1
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 1.4e-177 626.7 467 70.0
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 3.2e-177 625.5 470 69.1
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 5.5e-177 624.8 551 60.8
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.2e-176 623.6 452 70.4
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 2.7e-176 622.5 474 68.6
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.5e-176 622.1 463 70.0
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 4.6e-176 621.7 465 68.2
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 4.6e-176 621.7 469 68.2
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 1.0e-175 620.5 483 68.1
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.3e-175 620.2 468 67.7
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.8e-175 619.8 466 68.7
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.8e-175 619.8 466 68.7
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.8e-175 619.8 478 68.4
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.3e-175 619.4 472 68.2
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.3e-175 619.4 467 67.9
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.3e-175 619.4 466 67.6
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 5.1e-175 618.2 469 68.9
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 6.7e-175 617.8 466 68.7
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.8e-173 612.5 475 67.2
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 3.7e-173 612.1 467 68.3
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 1.4e-172 610.1 473 66.4
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.8e-172 609.8 470 67.4
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 2.4e-172 609.4 463 68.3
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 7.6e-171 604.4 444 70.5
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 2.9e-170 602.4 467 69.2
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 6.5e-170 601.3 465 68.4
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 8.4e-170 600.9 443 71.1
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.1e-169 600.5 479 66.8
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.2e-169 599.0 463 69.1
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 7.1e-169 597.8 465 67.5
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 7.1e-169 597.8 466 68.0
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.2e-168 597.0 463 68.0
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.2e-168 597.0 469 67.6
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 2.7e-168 595.9 471 65.6
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 3.5e-168 595.5 467 65.3
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.6e-168 595.1 467 66.4
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 4.6e-168 595.1 466 67.6
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.3e-167 593.6 466 65.5
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 5.1e-167 591.7 419 70.2
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 8.7e-167 590.9 466 67.2
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 7.4e-166 587.8 456 67.8
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.6e-165 586.6 456 67.8
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 4.8e-165 585.1 465 67.1
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.4e-164 583.6 465 65.4
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.4e-164 582.8 471 63.9
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 9.0e-164 580.9 466 66.5
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.2e-163 580.5 475 64.8
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.2e-163 580.5 471 63.9
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.5e-163 580.1 471 64.1
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 5.9e-163 578.2 462 64.7
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 5.0e-162 575.1 464 65.7
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.9e-161 573.2 471 64.3
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.7e-160 569.3 469 64.0
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.8e-159 566.6 464 66.2
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 3.0e-159 565.8 470 62.3
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 1.3e-157 560.5 425 69.6
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.7e-157 560.1 466 65.9
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 2.2e-157 559.7 466 65.9
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 2.8e-157 559.3 435 68.3
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 2.9e-154 549.3 515 58.1
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 7.9e-152 541.2 464 62.3
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 4.5e-147 525.4 465 61.7
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 1.7e-146 523.5 420 66.4
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 2.9e-146 522.7 456 62.9
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.8e-146 522.3 322 81.7
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 5.5e-145 518.5 459 59.7
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.4e-140 503.8 443 57.3
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.8e-140 503.4 450 61.1
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.5e-137 493.0 466 57.9
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 6.3e-133 478.4 484 56.6
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.6e-131 473.8 378 64.0
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 9.4e-129 464.5 529 53.5
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.4e-127 460.7 418 60.3
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 6.3e-125 451.8 341 68.0
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.0e-122 442.2 446 50.9
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 4.2e-121 439.1 494 50.0
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 9.5e-121 438.0 306 76.1
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 7.3e-113 411.8 469 49.5
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 8.9e-111 404.8 466 50.0
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.9e-105 387.1 474 48.5
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.5e-99 366.3 266 70.7
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.5e-94 350.9 322 60.2
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.7e-88 329.3 289 59.9
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.4e-87 327.0 334 55.4
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 3.6e-80 303.1 481 41.8
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 4.4e-78 296.2 261 61.3
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 3.2e-76 290.0 209 70.3
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.0e-74 285.0 232 63.4
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 8.7e-74 282.0 314 51.3
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.3e-72 278.1 184 76.1
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 8.1e-72 275.4 520 38.1
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.4e-71 273.9 226 62.4
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.4e-68 262.7 209 64.6
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.6e-67 261.2 237 61.2
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.5e-65 253.8 209 63.6
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.0e-61 241.9 158 77.8
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 8.7e-58 228.8 215 54.0
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 7.9e-51 205.7 120 82.5
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.7e-50 202.6 275 45.5
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 3.4e-46 190.3 187 52.9
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.6e-43 180.3 146 67.1
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.7e-40 171.4 169 51.5
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.1e-39 168.7 336 36.3
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.4e-39 168.3 146 61.0
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 4.1e-39 166.8 316 35.4
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 1.8e-34 151.4 311 34.7
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 2.0e-30 137.9 81 76.5
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 8.5e-29 132.5 154 51.9
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.2e-27 128.6 173 46.2
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.1e-27 127.9 76 77.6
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.7e-27 127.5 79 84.8
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 4.7e-27 126.7 121 60.3
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 1.8e-23 114.8 126 52.4
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.0e-22 111.3 113 59.3
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.8e-15 88.2 101 53.5
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 5.5e-12 76.6 63 60.3
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 6.1e-11 73.2 51 72.5
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 6.8e-10 69.7 42 81.0
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 8.8e-10 69.3 114 41.2
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.2e-09 68.9 63 55.6
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 2.8e-08 64.3 76 51.3
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 7.0e-07 59.7 65 52.3
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 1.6e-06 58.5 36 72.2


User provided reference genes

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