Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 0.0e+00 1558.9 840 100.0
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 5.6e-148 529.3 879 43.8
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 2.0e-105 387.9 930 36.5
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 2.1e-99 367.9 1001 34.4
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 3.1e-98 364.0 1015 33.3
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 6.3e-91 339.7 934 35.3
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.3e-83 315.5 875 34.6
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 3.7e-83 313.9 871 34.1
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 9.4e-79 299.3 904 33.2
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.1e-74 285.8 918 31.8
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 2.5e-71 274.6 891 31.4
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 6.3e-67 260.0 1010 29.8
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.1e-66 259.2 924 31.3
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.4e-66 258.1 1006 29.5
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 2.2e-64 251.5 850 30.7
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 2.3e-61 241.5 936 28.7
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 8.2e-59 233.0 845 33.1
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.1e-58 231.1 850 30.4
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.3e-56 225.7 1030 27.9
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.1e-55 222.6 1028 27.6
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 4.2e-55 220.7 984 28.8
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.6e-54 218.8 1119 26.5
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-51 209.1 1076 26.6
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.7e-49 201.4 909 27.4
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.9e-47 195.3 852 29.2
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 2.1e-46 191.8 925 27.2
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.7e-43 182.2 923 28.2
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 2.8e-43 181.4 937 27.4
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.1e-42 179.5 823 29.8
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.1e-42 177.9 838 29.8
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.3e-40 172.6 915 27.8
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 1.7e-40 172.2 951 25.9
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.9e-40 171.4 840 29.0
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.9e-40 171.4 965 26.9
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 5.0e-40 170.6 919 25.6
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.5e-39 168.3 828 29.2
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.1e-38 165.2 845 29.1
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.6e-38 164.5 828 29.3
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.8e-37 162.2 823 26.1
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 3.0e-37 161.4 850 28.4
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 3.7e-35 154.5 426 34.3
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 4.9e-35 154.1 907 24.3
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 4.9e-35 154.1 940 26.8
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 8.3e-35 153.3 869 26.6
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 8.3e-35 153.3 844 26.5
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.4e-34 152.5 866 25.6
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 5.4e-34 150.6 888 25.7
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 2.0e-33 148.7 939 25.1
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 3.0e-32 144.8 865 25.1
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.9e-31 142.1 186 46.8
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 7.3e-31 140.2 940 24.3
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.3e-31 140.2 948 25.5
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.1e-30 138.7 888 24.9
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 1.4e-29 136.0 867 25.3
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.8e-29 135.6 134 50.7
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.8e-29 135.6 869 25.1
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 5.2e-29 134.0 925 25.1
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 2.6e-28 131.7 861 27.1
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 4.4e-28 131.0 478 29.1
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.8e-28 129.8 829 27.3
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.3e-27 129.4 837 26.5
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.2e-27 128.6 858 24.9
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.9e-26 125.6 830 26.4
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.1e-26 124.4 163 45.4
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 3.5e-25 121.3 839 26.5
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 3.5e-25 121.3 971 23.7
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.6e-25 120.9 109 56.0
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 3.0e-24 118.2 347 34.0
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 3.9e-24 117.9 131 47.3
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 3.9e-24 117.9 131 47.3
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 6.6e-24 117.1 250 35.2
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.1e-23 116.3 425 31.5
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 1.9e-23 115.5 102 53.9
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.3e-23 114.8 830 26.7
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.3e-23 114.4 116 53.4
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 5.6e-23 114.0 893 23.9
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 9.5e-23 113.2 134 47.8
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.2e-22 112.8 899 23.4
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.8e-22 111.7 854 24.2
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 8.1e-22 110.2 869 25.1
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 2.3e-21 108.6 609 26.1
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 8.9e-21 106.7 939 23.4
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 8.9e-21 106.7 107 54.2
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 1.5e-20 105.9 474 30.6
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 5.8e-20 104.0 83 56.6
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 9.9e-20 103.2 108 49.1
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-19 102.8 501 27.3
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.7e-19 102.4 84 57.1
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.1e-18 99.8 120 47.5
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 2.4e-18 98.6 296 29.4
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 4.6e-17 94.4 75 58.7
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 7.8e-17 93.6 326 28.5
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.0e-16 93.2 126 43.7
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 5.1e-16 90.9 128 43.0
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 5.1e-16 90.9 128 43.0
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 6.6e-16 90.5 124 44.4
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.5e-15 89.4 127 41.7
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 1.5e-15 89.4 487 27.1
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 1.9e-15 89.0 217 32.7
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 1.9e-15 89.0 451 26.8
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 1.9e-15 89.0 423 27.0
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.6e-14 85.9 408 26.5
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 6.2e-14 84.0 72 51.4
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 6.2e-14 84.0 288 31.6
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 8.1e-14 83.6 131 40.5
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.1e-13 83.2 290 30.7
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 1.4e-13 82.8 360 25.8
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 2.4e-13 82.0 99 42.4
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 6.8e-13 80.5 427 25.8
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 1.2e-12 79.7 652 26.8
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 2.6e-12 78.6 617 26.3
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 4.4e-12 77.8 291 26.5
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 4.4e-12 77.8 506 23.9
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 5.8e-12 77.4 123 41.5
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 7.6e-12 77.0 319 26.6
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.3e-11 76.3 108 39.8
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 4.9e-11 74.3 509 23.4
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 6.4e-11 73.9 492 24.8
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.9e-10 72.4 508 25.8
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 4.1e-10 71.2 256 30.5
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 7.1e-10 70.5 100 40.0
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 9.2e-10 70.1 131 32.8
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.2e-09 69.7 228 31.6
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 7.8e-09 67.0 128 35.9
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 1.3e-08 66.2 43 53.5
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 8.7e-08 63.5 61 47.5
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 1.1e-07 63.2 783 22.9
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.5e-07 62.8 238 33.2
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 1.2e-06 59.7 498 23.3
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 4.7e-06 57.8 68 38.2


User provided reference genes

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