Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.4e-90 336.3 166 100.0
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.9e-55 219.5 172 67.4
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.3e-53 213.4 170 68.2
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.9e-52 209.5 171 64.9
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 5.6e-52 208.0 171 64.3
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 6.2e-51 204.5 172 65.7
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 2.0e-49 199.5 171 62.0
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 9.9e-49 197.2 172 63.4
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 2.9e-48 195.7 167 63.5
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.6e-46 189.9 172 61.0
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 2.1e-46 189.5 163 65.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 3.5e-46 188.7 171 62.0
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.3e-45 186.0 170 61.2
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.7e-45 184.1 172 59.3
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.6e-43 179.9 170 59.4
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 2.1e-43 179.5 173 57.8
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.1e-43 179.5 173 57.8
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.8e-43 179.1 176 57.4
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.8e-43 179.1 179 57.5
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.2e-43 177.9 168 57.7
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.4e-42 176.8 172 58.7
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 1.8e-42 176.4 170 58.8
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 1.5e-41 173.3 170 58.2
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 3.4e-41 172.2 170 57.1
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 7.6e-41 171.0 169 58.6
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 9.9e-41 170.6 170 59.4
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.2e-40 169.5 169 57.4
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 3.8e-40 168.7 166 60.2
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.9e-40 168.3 169 56.8
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.2e-39 165.6 170 54.7
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 4.2e-39 165.2 170 54.7
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 5.4e-39 164.9 175 57.1
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.1e-39 164.5 163 57.1
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.1e-39 164.5 167 55.7
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.5e-38 162.2 172 52.9
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.6e-38 161.8 172 52.9
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 7.9e-38 161.0 173 58.4
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-37 160.2 163 55.8
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.3e-37 160.2 172 50.6
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.8e-37 159.8 176 52.8
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.7e-37 157.9 172 50.6
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 8.7e-37 157.5 172 50.6
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.5e-36 156.8 170 52.4
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.5e-36 156.8 166 54.2
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.9e-36 156.4 170 53.5
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 1.9e-36 156.4 171 55.0
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 3.3e-36 155.6 171 54.4
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 4.3e-36 155.2 173 57.2
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 4.3e-36 155.2 170 55.9
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 5.6e-36 154.8 166 54.8
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 5.6e-36 154.8 170 55.9
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 5.6e-36 154.8 170 55.9
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 4.8e-35 151.8 170 54.7
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 8.1e-35 151.0 174 50.0
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 2.4e-34 149.4 161 55.3
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 2.4e-34 149.4 164 52.4
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 3.1e-34 149.1 172 52.9
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 3.1e-34 149.1 170 52.4
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 1.2e-33 147.1 171 50.3
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 1.5e-33 146.7 174 48.3
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.5e-33 146.7 167 51.5
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 2.6e-33 146.0 166 50.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 5.8e-33 144.8 171 50.3
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.3e-32 143.7 171 50.9
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.2e-32 142.9 167 52.1
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.9e-32 142.5 167 52.1
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.9e-32 141.7 169 50.3
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 6.5e-32 141.4 172 51.2
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 8.4e-32 141.0 147 53.1
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 8.4e-32 141.0 170 48.2
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.4e-31 140.2 171 49.7
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.4e-31 140.2 172 50.6
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 2.5e-31 139.4 166 50.0
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.2e-30 137.1 169 50.9
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 2.1e-30 136.3 166 49.4
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 1.0e-29 134.0 153 51.0
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 1.0e-29 134.0 164 50.6
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 1.8e-29 133.3 166 49.4
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.1e-28 130.6 171 45.0
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 6.2e-27 124.8 128 53.9
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 2.4e-26 122.9 168 45.2
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.1e-26 122.5 153 47.7
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.2e-25 120.6 153 47.7
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.2e-25 120.6 166 45.8
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 1.7e-24 116.7 147 48.3
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.4e-23 113.6 164 42.7
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.2e-23 112.5 165 45.5
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 3.2e-23 112.5 80 75.0
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.2e-22 110.5 171 40.9
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.3e-21 107.1 166 45.8
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.9e-21 105.5 157 46.5
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 6.7e-21 104.8 171 41.5
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 6.7e-21 104.8 166 43.4
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.5e-20 103.6 149 44.3
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 3.3e-20 102.4 169 43.8
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.7e-20 101.7 162 42.6
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.3e-19 100.5 166 40.4
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 3.7e-19 99.0 166 42.2
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 4.8e-19 98.6 127 53.5
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 3.1e-18 95.9 155 43.2
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.2e-17 94.0 157 42.7
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 1.2e-17 94.0 167 38.3
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 8.5e-16 87.8 142 35.2
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.4e-15 87.0 168 38.1
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 9.4e-15 84.3 124 44.4
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 4.6e-14 82.0 170 35.9
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 6.1e-14 81.6 147 36.1
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 6.1e-14 81.6 147 36.7
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 6.1e-14 81.6 147 36.1
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 6.1e-14 81.6 147 36.7
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.8e-13 80.1 131 45.0
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 8.8e-13 77.8 167 37.7
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 1.1e-12 77.4 163 35.6
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 5.7e-12 75.1 130 37.7
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 7.4e-12 74.7 116 41.4
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.3e-11 73.9 116 44.0
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 2.8e-11 72.8 116 44.0
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 1.4e-10 70.5 159 37.1
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 9.1e-10 67.8 119 41.2
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 2.0e-09 66.6 156 36.5
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 2.0e-09 66.6 56 60.7
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 7.7e-09 64.7 119 40.3
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 7.7e-09 64.7 132 31.1
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.8e-08 62.4 128 35.2
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 5.5e-07 58.5 155 31.6
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.2e-07 58.2 165 35.2
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.6e-06 57.0 154 29.9


User provided reference genes

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