Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 0.0e+00 1692.9 861 100.0
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1202.6 873 72.1
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 1.8e-303 1045.8 867 63.8
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 2.0e-302 1042.3 862 64.3
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 4.2e-300 1034.6 868 62.8
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 2.7e-299 1031.9 866 63.0
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 1.8e-298 1029.2 867 63.2
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 1.5e-297 1026.2 866 62.8
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 2.5e-292 1008.8 866 61.1
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 4.6e-291 1004.6 862 61.6
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 3.9e-290 1001.5 869 61.1
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 3.9e-290 1001.5 866 60.6
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 2.2e-288 995.7 866 61.8
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 2.8e-288 995.3 862 60.9
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 3.2e-284 981.9 866 59.9
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 4.2e-284 981.5 866 59.9
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 2.1e-283 979.2 865 59.3
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 4.6e-283 978.0 866 59.7
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 4.3e-281 971.5 868 59.4
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 1.7e-280 969.5 864 60.9
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 2.8e-280 968.8 869 58.6
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 5.3e-279 964.5 796 63.6
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 6.5e-277 957.6 868 59.9
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 1.4e-276 956.4 863 59.3
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 1.6e-275 953.0 862 58.8
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 2.7e-275 952.2 863 59.1
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 3.3e-273 945.3 864 58.2
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 2.6e-262 909.1 752 64.8
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 7.2e-260 901.0 862 54.3
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 4.4e-257 891.7 864 56.7
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 7.5e-257 891.0 864 54.1
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 5.0e-253 878.2 868 53.1
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 1.6e-251 873.2 869 54.5
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 4.7e-251 871.7 874 53.8
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 2.3e-250 869.4 864 53.6
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 9.8e-249 864.0 864 53.5
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 1.7e-248 863.2 866 52.2
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 8.3e-248 860.9 870 54.5
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 7.0e-247 857.8 742 60.2
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 7.0e-247 857.8 865 52.6
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 1.2e-246 857.1 860 54.2
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 2.0e-246 856.3 865 52.5
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 5.2e-242 841.6 861 53.8
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 2.6e-241 839.3 861 51.9
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 1.3e-240 837.0 872 51.5
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 8.3e-240 834.3 871 51.3
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 1.8e-239 833.2 868 52.8
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 3.2e-239 832.4 869 52.8
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 3.5e-238 828.9 867 50.4
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 2.3e-237 826.2 863 51.7
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 1.5e-236 823.5 867 51.7
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 3.3e-236 822.4 863 52.1
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 3.3e-236 822.4 868 52.1
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 2.3e-234 816.2 864 51.5
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 2.0e-233 813.1 878 53.0
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 8.3e-232 807.7 867 49.9
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 2.4e-231 806.2 872 50.7
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 2.0e-230 803.1 864 52.0
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 4.6e-230 802.0 865 49.0
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 2.3e-226 789.6 871 49.9
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 2.3e-226 789.6 866 49.8
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 3.1e-226 789.3 866 49.4
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 5.2e-226 788.5 865 49.4
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 5.8e-225 785.0 863 50.5
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 9.8e-225 784.3 866 49.7
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 1.7e-224 783.5 866 48.4
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.7e-224 783.5 800 52.1
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 1.4e-223 780.4 754 56.4
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 7.1e-223 778.1 802 51.2
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 1.1e-218 764.2 871 48.3
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 6.8e-218 761.5 868 48.0
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 6.8e-218 761.5 864 48.8
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 2.2e-216 756.5 868 47.5
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 1.1e-215 754.2 764 55.0
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 1.6e-214 750.4 867 47.5
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 3.5e-214 749.2 868 47.2
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 3.5e-214 749.2 868 47.2
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 6.0e-214 748.4 865 50.1
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 2.3e-213 746.5 897 46.4
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 3.3e-212 742.7 865 47.5
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 4.3e-212 742.3 897 47.9
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 8.9e-210 734.6 865 47.9
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.9e-208 729.6 823 47.9
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 6.6e-205 718.4 864 48.5
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 9.6e-204 714.5 866 45.8
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.6e-203 713.8 864 48.3
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.8e-202 710.3 865 47.3
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 1.4e-199 700.7 706 52.7
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 4.9e-192 675.6 829 44.4
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.9e-175 620.5 858 43.2
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 1.8e-173 614.0 864 40.2
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 5.7e-172 609.0 867 41.1
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 4.1e-170 602.8 494 64.6
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 4.5e-161 572.8 713 49.8
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 5.0e-152 542.7 572 51.9
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 3.8e-144 516.5 653 45.3
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 1.7e-128 464.5 879 35.3
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 1.1e-101 375.6 610 40.5
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 3.9e-88 330.5 350 49.4
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 3.3e-87 327.4 605 36.4
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 1.7e-80 305.1 389 46.0
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 3.3e-79 300.8 383 44.6
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 7.6e-76 289.7 308 49.7
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.3e-75 288.9 374 43.0
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 9.6e-71 272.7 240 55.8
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 1.3e-67 262.3 284 48.9
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.3e-51 209.1 281 42.0
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 1.4e-48 199.1 836 25.7
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 1.2e-44 186.0 191 50.3
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 1.5e-44 185.7 893 23.6
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 3.1e-37 161.4 139 64.0
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 4.1e-29 134.4 115 64.3
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 8.5e-27 126.7 209 34.0
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 5.5e-26 124.0 122 59.8
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 2.2e-19 102.1 120 46.7
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 4.7e-17 94.4 117 50.4
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 2.2e-14 85.5 114 45.6
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 1.1e-13 83.2 167 30.5
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 1.0e-11 76.6 65 58.5
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 8.6e-11 73.6 55 60.0
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 2.5e-10 72.0 49 65.3
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 7.3e-10 70.5 66 48.5


User provided reference genes

Program Settings