Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1664 Acer truncatum HOM05D000002 ORTHO05D000001 4.0e-72 274.6 136 100.0
RcHm_v2.0_Chr2g0124571 Rosa chinensis HOM05D000011 ORTHO05D000157 1.0e-22 110.5 121 44.6
RcHm_v2.0_Chr5g0032551 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-22 110.5 121 44.6
Sabra13G0070400 Salix brachista HOM05D000002 ORTHO05D000001 3.9e-19 98.6 127 37.8
Hma1.2p1_0020F.1_g014040 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.2e-17 92.8 124 40.3
Atru.chr2.1455 Acer truncatum HOM05D000002 ORTHO05D000001 9.1e-16 87.4 63 66.7
Hma1.2p1_1307F.1_g274730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-15 87.0 124 37.9
FvH4_3g38081 Fragaria vesca HOM05D000002 ORTHO05D000001 1.5e-15 86.7 125 32.8
FvH4_1g28434 Fragaria vesca HOM05D000002 ORTHO05D000001 5.0e-14 81.6 114 36.0
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.1e-13 80.5 129 38.0
FvH4_6g11492 Fragaria vesca HOM05D000002 ORTHO05D000001 2.5e-13 79.3 125 33.6
FvH4_7g19191 Fragaria vesca HOM05D000002 ORTHO05D000001 2.5e-13 79.3 114 35.1
RcHm_v2.0_Chr5g0038991 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-13 79.3 125 35.2
Hma1.2p1_0948F.1_g240460 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.7e-12 75.1 97 39.2
Sabra11G0010600 Salix brachista HOM05D000002 ORTHO05D000001 7.9e-12 74.3 110 39.1
MD12G1185900 Malus domestica HOM05D000002 ORTHO05D000001 1.4e-11 73.6 132 37.9
TAR192G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.8e-11 73.2 111 38.7
Oeu039050.1 Olea europaea HOM05D000002 ORTHO05D000001 8.8e-11 70.9 104 38.5
Sabra02G0139200 Salix brachista HOM05D000002 ORTHO05D000001 8.8e-11 70.9 128 33.6
Rhsim05G0196600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.1e-10 70.5 132 35.6
Lj2C1206G8 Lonicera japonica HOM05D014274 ORTHO05D000001 1.5e-10 70.1 97 41.2
Migut.G00019 Erythranthe guttata HOM05D000002 ORTHO05D000001 3.3e-10 68.9 130 33.1
Hma1.2p1_0170F.1_g075160 Hydrangea macrophylla HOM05D014274 ORTHO05D000001 5.7e-10 68.2 97 38.1
Prupe.4G199600 Prunus persica HOM05D000002 ORTHO05D000001 5.7e-10 68.2 111 35.1
MD00G1024600 Malus domestica HOM05D000002 ORTHO05D000001 7.4e-10 67.8 130 36.9
TAR720G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.4e-10 67.8 134 32.1
MD12G1175300 Malus domestica HOM05D000002 ORTHO05D000001 9.7e-10 67.4 126 37.3
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-09 66.6 142 33.8
Gorai.008G092500 Gossypium raimondii HOM05D000002 ORTHO05D000001 2.2e-09 66.2 129 33.3
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.8e-09 65.9 125 33.6
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 6.3e-09 64.7 135 29.6
Oeu005617.1 Olea europaea HOM05D000002 ORTHO05D000001 8.2e-09 64.3 125 36.8
Ciclev10013389m.g Citrus clementina HOM05D014049 ORTHO05D000001 1.1e-08 63.9 130 31.5
Sopen07g003750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-08 63.9 118 37.3
TAR386G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.8e-08 63.2 131 31.3
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 2.4e-08 62.8 102 30.4
Oeu037102.1 Olea europaea HOM05D000002 ORTHO05D000001 2.4e-08 62.8 106 36.8
Sabra01G0117000 Salix brachista HOM05D000002 ORTHO05D000001 2.4e-08 62.8 120 35.0
Oeu021500.1 Olea europaea HOM05D000002 ORTHO05D000001 3.1e-08 62.4 104 34.6
Oeu059914.1 Olea europaea HOM05D000002 ORTHO05D000001 3.1e-08 62.4 125 36.0
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.1e-08 62.4 110 30.0
COL.COLO4_14937 Corchorus olitorius HOM05D000002 ORTHO05D000001 4.1e-08 62.0 110 29.1
Dinv23999 Davidia involucrata HOM05D000097 ORTHO05D000041 4.1e-08 62.0 129 31.0
Sabra15G0060800 Salix brachista HOM05D000113 ORTHO05D000001 4.1e-08 62.0 131 30.5
TAR084G0004 Trochodendron aralioides HOM05D001435 ORTHO05D001304 4.1e-08 62.0 128 32.0
COL.COLO4_36674 Corchorus olitorius HOM05D042556 ORTHO05D000001 5.3e-08 61.6 131 32.8
Oeu012960.1 Olea europaea HOM05D000002 ORTHO05D000001 5.3e-08 61.6 125 35.2
Oeu057479.1 Olea europaea HOM05D000002 ORTHO05D000001 7.0e-08 61.2 111 33.3
Sopen01g009960 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-08 61.2 103 35.0
MD12G1254500 Malus domestica HOM05D002861 ORTHO05D003104 9.1e-08 60.8 126 33.3
THA.LOC109115986 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.1e-08 60.8 108 30.6
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-07 60.5 116 37.1
Hma1.2p1_0700F.1_g205820 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-07 60.5 131 29.8
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 1.2e-07 60.5 119 33.6
QL02p077346 Quercus lobata HOM05D000002 ORTHO05D000001 1.5e-07 60.1 126 34.9
Rhsim01G0007500 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-07 60.1 101 33.7
Dinv15019 Davidia involucrata HOM05D000097 ORTHO05D000041 2.0e-07 59.7 132 31.8
FvH4_3g17262 Fragaria vesca HOM05D000002 ORTHO05D000001 2.0e-07 59.7 114 33.3
Oeu003487.1 Olea europaea HOM05D000002 ORTHO05D000001 2.0e-07 59.7 106 34.0
Rhsim01G0134800 Rhododendron simsii HOM05D002709 ORTHO05D002914 2.0e-07 59.7 101 32.7
Sabra05G0005600 Salix brachista HOM05D000002 ORTHO05D000001 2.0e-07 59.7 131 29.8
COL.COLO4_33694 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.6e-07 59.3 126 31.0
HanXRQChr07g0187191 Helianthus annuus HOM05D000002 ORTHO05D000001 2.6e-07 59.3 130 30.0
MD12G1254800 Malus domestica HOM05D002861 ORTHO05D003104 3.4e-07 58.9 106 35.8
Rhsim03G0181300 Rhododendron simsii HOM05D000071 ORTHO05D000029 3.4e-07 58.9 104 30.8
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.4e-07 58.9 122 33.6
C09p34990 Brassica napus HOM05D000002 ORTHO05D000001 4.5e-07 58.5 121 33.9
ECA233G0266 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.5e-07 58.5 120 33.3
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 4.5e-07 58.5 122 32.0
Atru.chr3.1163 Acer truncatum HOM05D000002 ORTHO05D000001 5.9e-07 58.2 134 29.9
MD13G1099200 Malus domestica HOM05D000002 ORTHO05D000001 7.7e-07 57.8 104 31.7
Rhsim06G0053500 Rhododendron simsii HOM05D000002 ORTHO05D000001 7.7e-07 57.8 112 33.0
Rhsim11G0082500 Rhododendron simsii HOM05D000002 ORTHO05D000001 7.7e-07 57.8 127 29.9
SHI16346 Sapria himalayana HOM05D000002 ORTHO05D000001 7.7e-07 57.8 106 30.2
TAR042G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.7e-07 57.8 145 29.7
Sopen01g012520 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-06 57.4 101 30.7
Ciclev10013318m.g Citrus clementina HOM05D000002 ORTHO05D000001 1.3e-06 57.0 123 30.9
Dinv23993 Davidia involucrata HOM05D000097 ORTHO05D000041 1.3e-06 57.0 125 28.8
COL.COLO4_20536 Corchorus olitorius HOM05D000002 ORTHO05D000001 1.7e-06 56.6 108 30.6
Dinv03005 Davidia involucrata HOM05D000097 ORTHO05D000041 1.7e-06 56.6 124 29.8
Oeu018031.1 Olea europaea HOM05D000002 ORTHO05D000001 1.7e-06 56.6 107 37.4
Rhsim02G0181800 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-06 56.6 104 30.8
MD03G1056000 Malus domestica HOM05D000002 ORTHO05D000001 2.2e-06 56.2 88 37.5
MD13G1050200 Malus domestica HOM05D000002 ORTHO05D000001 2.2e-06 56.2 120 32.5
Rhsim02G0228300 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.2e-06 56.2 129 32.6
THA.LOC104798820 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.2e-06 56.2 119 27.7
Atru.chr7.1131 Acer truncatum HOM05D000002 ORTHO05D000001 2.9e-06 55.8 125 30.4
Atru.chr9.1635 Acer truncatum HOM05D000002 ORTHO05D000001 2.9e-06 55.8 104 31.7
ECA238G0397 Erigeron canadensis HOM05D000152 ORTHO05D000609 2.9e-06 55.8 120 30.0
Lju225C4G4 Lonicera japonica HOM05D000002 ORTHO05D000001 2.9e-06 55.8 96 35.4
Rhsim04G0020900 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.9e-06 55.8 101 29.7
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.9e-06 55.8 144 29.9
HanXRQChr17g0541481 Helianthus annuus HOM05D000002 ORTHO05D000001 3.8e-06 55.5 104 32.7
Hma1.2p1_2812F.1_g328890 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 3.8e-06 55.5 116 31.0
MD17G1248200 Malus domestica HOM05D000002 ORTHO05D000001 3.8e-06 55.5 120 31.7
TAR492G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.8e-06 55.5 126 31.0
CSS0025416 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-06 54.7 128 32.0
Ciclev10030281m.g Citrus clementina HOM05D000132 ORTHO05D000058 6.5e-06 54.7 104 27.9
ECA247G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.5e-06 54.7 106 32.1
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 8.5e-06 54.3 115 32.2
CSS0017162 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.5e-06 54.3 104 30.8
FvH4_2g06411 Fragaria vesca HOM05D000002 ORTHO05D000001 8.5e-06 54.3 101 28.7
MD14G1189500 Malus domestica HOM05D000002 ORTHO05D000001 8.5e-06 54.3 114 28.9
Sed0010177 Sechium edule HOM05D000002 ORTHO05D000001 8.5e-06 54.3 120 29.2


User provided reference genes

Program Settings