Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 4.3e-89 331.6 212 100.0
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 9.9e-78 293.9 217 91.2
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 2.1e-27 126.7 233 43.8
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 3.0e-26 122.9 208 41.8
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 5.2e-26 122.1 225 41.3
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.2e-25 120.9 231 39.8
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.2e-25 120.9 226 42.0
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.5e-25 120.6 226 43.4
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 5.7e-25 118.6 218 40.4
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 7.5e-25 118.2 215 42.8
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 7.5e-25 118.2 230 40.9
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.7e-24 117.1 220 40.9
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.7e-24 117.1 228 40.8
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 4.8e-24 115.5 229 40.6
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.1e-23 114.4 219 39.3
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.8e-23 113.6 219 39.3
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.8e-23 113.6 219 40.6
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 2.4e-23 113.2 226 38.9
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 3.1e-23 112.8 229 39.7
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 4.1e-23 112.5 223 39.0
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 5.4e-23 112.1 228 39.9
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 5.4e-23 112.1 226 38.5
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 7.0e-23 111.7 243 41.2
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 7.0e-23 111.7 222 39.2
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 9.1e-23 111.3 217 42.4
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 9.1e-23 111.3 228 39.9
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.6e-22 110.5 231 39.0
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.6e-22 110.5 206 39.3
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.6e-22 110.5 207 41.1
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 4.5e-22 109.0 220 38.6
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.0e-21 107.8 228 39.0
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 2.2e-21 106.7 216 38.4
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 2.2e-21 106.7 222 42.8
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.9e-21 106.3 228 39.0
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 5.0e-21 105.5 234 37.2
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 6.5e-21 105.1 217 36.4
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 8.5e-21 104.8 233 41.6
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.5e-20 103.2 232 33.6
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.2e-20 102.4 219 38.8
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.2e-20 102.4 221 41.2
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.2e-19 100.9 224 36.6
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.6e-19 100.5 214 37.4
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.1e-19 98.6 215 37.7
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 6.1e-19 98.6 217 36.4
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 8.0e-19 98.2 225 34.7
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 8.0e-19 98.2 235 32.3
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 1.4e-18 97.4 226 33.2
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.4e-18 97.4 222 37.4
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.8e-18 97.1 225 36.4
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 3.0e-18 96.3 208 34.6
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.6e-17 93.2 206 35.4
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 3.4e-17 92.8 221 35.7
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.4e-17 92.8 211 39.8
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 5.7e-17 92.0 212 34.4
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.5e-17 91.7 204 35.8
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.8e-17 91.3 204 35.3
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.3e-16 90.9 210 36.7
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.2e-16 90.1 110 48.2
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.2e-16 90.1 110 48.2
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.2e-16 90.1 216 36.1
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.8e-16 89.7 106 46.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 3.7e-16 89.4 209 33.5
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 4.9e-16 89.0 225 31.6
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.3e-16 88.6 204 35.8
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.1e-15 87.8 228 33.8
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 1.4e-15 87.4 216 35.6
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 1.4e-15 87.4 217 32.3
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.8e-15 87.0 211 36.5
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.8e-15 87.0 211 35.1
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 2.4e-15 86.7 106 49.1
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 2.4e-15 86.7 212 30.2
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 2.4e-15 86.7 210 36.2
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.4e-15 86.7 210 36.2
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.4e-15 86.7 213 40.4
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 3.1e-15 86.3 205 34.1
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 4.1e-15 85.9 105 49.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 5.4e-15 85.5 201 36.3
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.6e-14 84.0 215 33.0
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.6e-14 84.0 103 46.6
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 2.0e-14 83.6 205 34.1
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.7e-14 83.2 105 48.6
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 2.7e-14 83.2 229 30.6
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 2.7e-14 83.2 221 31.7
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 4.5e-14 82.4 103 46.6
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 5.9e-14 82.0 213 33.8
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.7e-14 81.6 207 40.1
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.3e-13 80.9 205 34.6
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.7e-13 80.5 210 31.9
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.7e-13 80.5 105 42.9
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.7e-13 80.5 203 32.0
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.3e-13 80.1 210 40.0
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.3e-13 80.1 214 31.8
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.9e-13 79.7 205 34.6
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.9e-13 79.7 118 41.5
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.8e-13 79.3 106 44.3
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 3.8e-13 79.3 104 44.2
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 5.0e-13 79.0 104 45.2
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 5.0e-13 79.0 104 45.2
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 6.6e-13 78.6 104 45.2
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 8.6e-13 78.2 206 29.6
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.1e-12 77.8 51 72.5
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-12 77.8 212 31.6
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 1.1e-12 77.8 115 39.1
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.5e-12 77.4 206 29.6
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.9e-12 77.0 103 43.7
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-12 77.0 103 43.7
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.9e-12 77.0 103 43.7
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.9e-12 77.0 117 43.6
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.3e-12 76.3 104 44.2
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 5.6e-12 75.5 103 43.7
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 5.6e-12 75.5 103 43.7
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 5.6e-12 75.5 128 44.5
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.3e-12 75.1 111 44.1
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 7.3e-12 75.1 227 34.8
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 9.5e-12 74.7 104 43.3
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 9.5e-12 74.7 104 43.3
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 9.5e-12 74.7 125 41.6
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-11 74.3 104 43.3
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-11 74.3 104 43.3
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.2e-11 74.3 104 43.3
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.2e-11 74.3 104 43.3
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.2e-11 74.3 103 43.7
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.6e-11 73.9 100 42.0
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.6e-11 73.9 224 29.0
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.1e-11 73.6 137 43.8
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 2.1e-11 73.6 211 32.2
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.1e-11 73.6 105 43.8
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 2.8e-11 73.2 103 41.7
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 4.7e-11 72.4 210 31.4
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 4.7e-11 72.4 113 40.7
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.7e-11 72.4 107 40.2
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 6.1e-11 72.0 104 42.3
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 8.0e-11 71.6 104 42.3
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 8.0e-11 71.6 210 33.8
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 8.0e-11 71.6 103 47.6
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.0e-10 71.2 141 42.6
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.0e-10 69.7 109 43.1
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.0e-10 69.7 223 29.6
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 4.0e-10 69.3 134 38.8
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 6.8e-10 68.6 106 37.7
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 8.9e-10 68.2 206 34.0
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 8.9e-10 68.2 50 68.0
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.2e-09 67.8 211 35.1
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 4.4e-09 65.9 108 38.0
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 4.4e-09 65.9 104 40.4
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 5.7e-09 65.5 213 34.7
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 7.5e-09 65.1 103 39.8
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 7.5e-09 65.1 103 39.8
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 7.5e-09 65.1 47 70.2
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 9.8e-09 64.7 108 37.0
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.7e-08 63.9 113 37.2
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 2.9e-08 63.2 205 36.1
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.9e-08 63.2 40 75.0
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 4.9e-08 62.4 118 41.5
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.9e-08 62.4 216 32.9
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.4e-07 60.8 47 72.3
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.4e-07 60.8 35 82.9
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.4e-07 60.1 40 67.5
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.1e-07 59.3 55 56.4
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 7.0e-07 58.5 112 34.8
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 9.2e-07 58.2 58 48.3
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.0e-06 57.0 56 51.8
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 2.0e-06 57.0 49 55.1
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.7e-06 56.6 41 68.3
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.5e-06 56.2 40 65.0
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.5e-06 56.2 40 65.0
arahy.Tifrunner.gnm1.ann1.PQMP7V Arachis hypogaea HOM05D001536 ORTHO05D001442 5.9e-06 55.5 48 54.2
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 7.8e-06 55.1 34 76.5


User provided reference genes

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