Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 0.0e+00 1422.9 749 100.0
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 1.0e-233 813.9 558 80.8
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 6.9e-142 508.8 737 46.4
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 2.6e-136 490.3 640 49.2
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 2.0e-133 480.7 817 44.7
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 5.0e-124 449.5 824 40.9
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.2e-122 444.9 819 42.1
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 2.3e-121 440.7 855 39.5
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 5.2e-121 439.5 813 42.1
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 3.4e-120 436.8 680 44.0
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.8e-119 433.7 631 46.1
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 3.7e-119 433.3 641 45.6
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 8.3e-119 432.2 414 57.5
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 1.4e-118 431.4 515 50.9
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 3.5e-117 426.8 485 52.4
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 5.9e-117 426.0 820 39.5
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 5.9e-117 426.0 812 40.8
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 3.0e-113 413.7 572 46.5
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 3.1e-110 403.7 493 50.1
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 9.1e-110 402.1 800 37.9
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 7.7e-109 399.1 677 41.8
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 4.4e-104 383.3 976 33.5
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 4.9e-103 379.8 491 48.3
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.3e-100 371.7 490 47.3
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 3.9e-100 370.2 638 40.4
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 6.6e-100 369.4 489 46.2
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 5.6e-99 366.3 696 38.4
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 1.2e-98 365.2 394 53.3
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 8.0e-98 362.5 426 52.1
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.8e-97 361.3 495 47.1
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 5.2e-97 359.8 497 46.1
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 1.2e-96 358.6 494 46.0
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.5e-96 358.2 799 36.2
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 5.8e-96 356.3 433 49.2
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 2.9e-95 354.0 414 50.2
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 6.4e-95 352.8 426 49.3
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.9e-94 351.3 557 43.3
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-93 348.6 483 45.1
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 6.0e-93 346.3 425 50.1
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 2.3e-92 344.4 404 50.7
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.0e-92 343.2 483 46.6
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.0e-92 343.2 483 46.6
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.0e-92 343.2 483 46.6
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 3.3e-91 340.5 404 51.2
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 1.2e-90 338.6 391 48.6
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 2.1e-90 337.8 607 38.1
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 3.6e-90 337.0 476 44.3
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 3.1e-89 334.0 292 61.0
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 3.1e-89 334.0 505 42.2
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 5.2e-89 333.2 516 43.8
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 1.2e-88 332.0 489 44.0
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.5e-88 331.6 391 49.4
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 1.5e-88 331.6 473 44.8
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 4.4e-88 330.1 394 51.0
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 5.8e-88 329.7 406 48.0
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.3e-87 328.6 382 49.7
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 2.2e-87 327.8 736 35.5
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 2.2e-87 327.8 425 48.0
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 2.2e-87 327.8 396 49.5
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 9.2e-86 322.4 480 43.1
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 1.2e-85 322.0 499 42.1
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 3.5e-85 320.5 296 60.5
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 4.6e-85 320.1 392 46.4
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.7e-84 318.2 429 45.5
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 2.3e-84 317.8 461 44.0
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 3.9e-84 317.0 581 39.6
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 5.1e-84 316.6 426 45.5
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.3e-83 313.9 628 38.7
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 3.3e-83 313.9 341 52.2
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 4.3e-83 313.5 484 43.4
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 7.3e-83 312.8 340 53.2
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.6e-82 310.5 630 37.9
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 1.1e-81 308.9 358 50.8
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.3e-81 307.8 304 55.6
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.1e-81 307.4 640 36.9
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 1.5e-80 305.1 390 47.2
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 2.4e-78 297.7 385 46.2
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 5.4e-78 296.6 683 35.6
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 7.1e-78 296.2 272 59.6
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 5.6e-75 286.6 383 44.4
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.6e-74 285.0 382 45.0
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.4e-73 282.0 431 42.7
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 5.2e-73 280.0 395 44.1
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 2.6e-72 277.7 293 54.6
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.4e-72 276.9 437 41.9
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 1.1e-70 272.3 583 36.2
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 1.2e-69 268.9 596 34.4
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.6e-69 268.5 547 38.6
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 7.8e-69 266.2 661 33.7
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 8.7e-68 262.7 546 36.4
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 5.6e-67 260.0 545 36.1
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 5.6e-67 260.0 597 32.7
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 9.6e-67 259.2 481 38.5
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.3e-66 258.8 597 32.7
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 1.1e-65 255.8 543 35.7
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 1.4e-65 255.4 481 38.3
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 2.4e-65 254.6 434 40.8
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 1.2e-64 252.3 253 56.9
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.1e-62 245.7 473 36.8
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 1.4e-62 245.4 416 40.6
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 1.2e-61 242.3 386 41.2
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.0e-60 239.2 247 54.3
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 5.6e-59 233.4 396 40.2
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 8.1e-58 229.6 394 40.1
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 3.1e-57 227.6 426 39.9
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 7.6e-56 223.0 555 35.1
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.3e-55 222.2 304 45.1
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 2.9e-55 221.1 225 56.4
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 1.0e-52 212.6 316 44.9
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 4.3e-51 207.2 309 42.1
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 2.9e-47 194.5 264 41.3
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.5e-45 187.6 262 42.7
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 8.7e-44 183.0 352 36.6
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 8.4e-39 166.4 370 31.6
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.2e-38 164.5 265 38.5
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.2e-37 162.5 163 59.5
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 1.3e-36 159.1 386 31.6
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 3.0e-36 157.9 542 27.1
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 4.3e-35 154.1 382 30.9
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 2.4e-33 148.3 196 46.4
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.3e-27 127.5 114 62.3
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 3.7e-26 124.4 250 36.4
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.9e-24 117.1 250 42.8
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 6.7e-20 103.6 472 29.4
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 4.4e-19 100.9 268 32.1
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 3.7e-18 97.8 173 38.2
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.0e-16 92.0 118 45.8
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 3.8e-15 87.8 158 41.1
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 1.1e-14 86.3 155 40.0
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 2.5e-14 85.1 93 45.2
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 3.2e-14 84.7 473 25.2
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 3.6e-13 81.3 187 35.8
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 1.8e-12 79.0 74 47.3
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 6.7e-12 77.0 503 27.8
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.7e-10 72.4 186 30.6
AL4G41050 Arabidopsis lyrata HOM05D004311 ORTHO05D005145 2.8e-10 71.6 368 25.0
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 6.3e-10 70.5 82 50.0
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 2.4e-09 68.6 142 35.2
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 4.1e-09 67.8 504 24.6
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.6e-08 65.9 53 62.3
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 3.5e-08 64.7 70 47.1
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 3.5e-08 64.7 228 29.8
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 4.5e-08 64.3 70 48.6
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 7.7e-08 63.5 136 31.6
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 2.5e-06 58.5 349 26.4
CARHR137580 Cardamine hirsuta HOM05D004311 ORTHO05D005145 4.2e-06 57.8 310 24.2


User provided reference genes

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