Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 0.0e+00 1180.2 628 100.0
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 0.0e+00 1180.2 628 100.0
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 8.4e-266 920.2 628 77.2
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 9.3e-233 810.4 634 68.6
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.6e-232 809.7 633 68.6
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 3.1e-228 795.4 632 68.2
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 4.1e-228 795.0 636 68.4
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.0e-227 792.7 624 68.6
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.6e-227 792.3 640 65.8
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 4.5e-227 791.6 633 67.6
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 7.7e-227 790.8 634 66.6
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 2.2e-226 789.3 635 65.5
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.5e-225 785.8 634 66.2
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 2.6e-222 775.8 637 65.5
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 2.2e-221 772.7 647 62.8
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 4.5e-219 765.0 636 66.5
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.7e-218 763.1 635 66.3
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.1e-217 760.4 636 66.2
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 1.9e-217 759.6 635 64.7
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.5e-217 758.1 635 66.5
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.0e-216 754.2 647 62.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.0e-215 753.8 647 62.3
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.3e-215 752.7 639 64.9
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-215 752.3 647 62.0
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-215 752.3 647 62.0
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 5.2e-215 751.5 638 64.3
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 3.3e-214 748.8 623 65.3
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.7e-214 748.0 647 61.8
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.3e-213 746.9 647 61.5
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-213 746.9 647 61.2
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 2.2e-213 746.1 638 63.3
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-212 742.7 647 61.2
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 4.1e-212 741.9 638 63.0
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.0e-210 737.3 638 62.7
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.6e-208 728.8 639 63.5
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 6.1e-208 728.0 635 63.6
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 4.0e-207 725.3 636 63.5
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.4e-206 721.8 636 61.9
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 4.1e-204 715.3 602 64.6
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 4.5e-203 711.8 636 61.9
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 5.9e-203 711.4 634 62.8
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 2.1e-200 703.0 635 59.7
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.6e-198 696.0 634 61.7
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 2.0e-195 686.4 666 58.6
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 4.5e-195 685.3 644 60.2
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 7.7e-195 684.5 641 60.1
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.9e-194 682.6 632 58.5
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 3.8e-194 682.2 644 59.8
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 9.5e-193 677.6 655 58.3
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 8.9e-191 671.0 658 58.2
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 6.3e-189 664.8 634 58.0
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.1e-188 664.1 629 58.3
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 3.1e-188 662.5 631 58.3
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 4.5e-187 658.7 633 57.7
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.0e-186 657.5 639 57.0
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.9e-185 653.3 634 56.8
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.9e-185 653.3 653 57.3
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 3.3e-185 652.5 644 56.2
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 2.8e-184 649.4 650 56.8
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 3.6e-184 649.0 636 57.7
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 4.7e-184 648.7 634 57.9
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.3e-183 646.4 643 58.2
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 3.0e-183 646.0 634 57.1
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.0e-183 645.6 649 55.5
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.2e-182 644.0 632 57.8
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 2.9e-181 639.4 633 57.5
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 8.3e-181 637.9 637 55.9
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.4e-180 636.3 631 58.3
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 9.2e-180 634.4 632 56.8
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 2.0e-179 633.3 624 57.5
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 2.0e-179 633.3 629 55.8
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 3.5e-179 632.5 640 56.1
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 6.0e-179 631.7 634 55.8
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 6.0e-179 631.7 624 57.2
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 2.3e-178 629.8 624 55.4
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 3.9e-178 629.0 631 56.4
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 8.6e-178 627.9 639 56.3
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 8.6e-178 627.9 642 55.6
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 5.8e-174 615.1 646 53.4
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.9e-172 610.1 640 53.1
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.3e-170 604.0 643 54.3
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 3.9e-170 602.4 568 59.9
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 7.3e-169 598.2 601 58.1
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 2.1e-168 596.7 642 53.1
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 4.9e-165 585.5 551 61.2
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 7.8e-163 578.2 642 52.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.0e-162 577.8 627 52.0
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.3e-161 572.4 622 50.8
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 5.6e-161 572.0 664 51.5
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 3.6e-160 569.3 666 50.9
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.8e-159 567.0 633 54.2
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.7e-157 560.5 633 51.5
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.1e-155 553.5 616 51.6
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.1e-155 553.5 588 54.4
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.7e-154 550.4 647 48.5
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.6e-154 548.5 470 66.0
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 3.3e-153 546.2 643 50.2
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.4e-151 540.8 630 49.0
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.8e-150 535.4 470 64.7
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 5.1e-146 522.3 615 50.9
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 8.1e-144 515.0 431 65.4
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.4e-143 514.2 657 48.6
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 2.4e-143 513.5 670 46.4
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 2.7e-139 500.0 661 46.0
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.1e-137 494.6 424 64.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.7e-136 489.6 630 46.2
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.4e-134 483.0 632 45.3
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 3.4e-134 483.0 495 55.4
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.3e-130 471.1 672 45.1
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.5e-129 467.6 628 49.0
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.0e-122 444.9 631 45.5
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.6e-120 437.6 407 59.0
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 4.1e-119 433.0 626 45.5
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 3.0e-106 390.2 332 60.8
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-105 387.9 605 43.3
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.7e-104 384.4 399 53.6
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.8e-104 383.6 626 41.9
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-101 374.8 626 42.3
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.1e-100 371.7 402 53.0
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.4e-100 371.3 348 59.5
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 3.6e-99 366.7 625 40.2
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 8.8e-98 362.1 625 39.8
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 6.3e-96 355.9 625 39.8
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 3.1e-95 353.6 625 39.7
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 2.5e-92 344.0 611 39.0
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.8e-87 327.8 613 38.3
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.7e-80 303.5 611 38.1
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 8.3e-80 302.4 660 32.7
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-78 298.5 609 37.3
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.7e-75 286.6 614 36.0
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-65 255.4 603 35.5
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.4e-64 249.6 566 35.7
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 3.6e-59 233.8 537 35.2
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 6.2e-51 206.5 169 66.3
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 3.4e-49 200.7 667 28.3
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.9e-48 197.6 301 43.2
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 4.9e-48 196.8 311 41.8
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 7.6e-41 172.9 198 52.0
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 6.4e-40 169.9 118 72.9
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 5.1e-37 160.2 144 61.1
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 2.5e-36 157.9 171 51.5
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 5.8e-33 146.7 263 39.5
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 9.9e-33 146.0 169 50.3
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 5.4e-31 140.2 364 32.7
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 9.3e-31 139.4 94 73.4
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 2.5e-28 131.3 105 63.8
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 2.5e-28 131.3 94 69.1
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 6.2e-27 126.7 90 66.7
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 6.9e-26 123.2 145 52.4
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 9.0e-26 122.9 472 26.9
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.3e-24 119.0 71 77.5
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.9e-24 117.9 96 59.4
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.4e-23 115.5 134 55.2
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 7.1e-23 113.2 90 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.2e-22 112.5 162 43.8
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 5.1e-21 107.1 90 60.0
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 4.3e-20 104.0 70 71.4
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 7.4e-20 103.2 108 54.6
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 1.8e-18 98.6 85 55.3
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 4.0e-18 97.4 218 36.7
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 4.0e-18 97.4 218 36.7
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-17 95.5 218 35.8
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 5.8e-17 93.6 135 47.4
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.3e-16 92.4 201 37.3
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.5e-12 79.0 49 73.5
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 3.1e-10 71.2 114 43.0
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 9.0e-10 69.7 55 63.6
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 2.0e-09 68.6 72 54.2
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 5.8e-09 67.0 80 46.2
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 5.8e-09 67.0 98 34.7
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.9e-08 64.7 59 59.3
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 6.5e-08 63.5 49 61.2


User provided reference genes

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