Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 8.1e-168 593.6 284 100.0
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 2.6e-134 482.3 273 83.5
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 5.5e-132 474.6 275 81.1
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.6e-131 473.0 275 80.4
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 1.6e-131 473.0 275 80.4
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 4.7e-131 471.5 275 79.6
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 5.1e-130 468.0 273 78.4
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 2.0e-129 466.1 275 79.3
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 5.7e-129 464.5 273 78.4
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 6.3e-128 461.1 283 73.5
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 6.3e-128 461.1 283 73.5
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 5.3e-127 458.0 273 76.9
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 7.0e-127 457.6 275 76.4
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 1.9e-124 449.5 275 76.4
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 2.1e-123 446.0 266 76.3
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.0e-122 443.7 273 75.8
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 1.0e-122 443.7 273 74.0
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.4e-122 443.4 273 75.8
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 1.4e-122 443.4 264 78.4
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 6.7e-122 441.0 245 81.2
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 9.7e-121 437.2 264 76.5
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 9.7e-121 437.2 275 73.1
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 1.3e-120 436.8 273 73.3
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 2.8e-120 435.6 259 75.3
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 3.7e-120 435.3 273 72.5
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 6.3e-120 434.5 277 72.6
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 6.3e-120 434.5 275 73.1
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 1.1e-119 433.7 268 74.6
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 2.4e-119 432.6 274 74.5
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 3.1e-119 432.2 263 74.9
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 3.1e-119 432.2 281 73.3
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 7.0e-119 431.0 275 72.4
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 2.0e-118 429.5 273 74.0
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 2.6e-118 429.1 281 69.0
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 3.5e-118 428.7 267 74.5
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 5.9e-118 427.9 267 74.2
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 7.7e-118 427.6 261 75.5
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 1.7e-117 426.4 274 71.2
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 2.9e-117 425.6 278 69.4
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 2.9e-117 425.6 259 74.5
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 8.5e-117 424.1 273 70.7
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 1.5e-116 423.3 266 73.7
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 4.2e-116 421.8 274 72.6
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 5.5e-116 421.4 273 70.0
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 5.5e-116 421.4 273 71.4
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 1.2e-115 420.2 266 72.9
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 2.1e-115 419.5 275 70.5
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 2.1e-115 419.5 270 70.4
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 2.3e-114 416.0 269 68.4
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 3.0e-114 415.6 273 69.2
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 8.8e-114 414.1 273 70.0
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 1.5e-113 413.3 255 76.5
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 1.5e-113 413.3 265 72.8
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 3.4e-113 412.1 273 69.2
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 4.4e-113 411.8 273 69.2
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 5.7e-113 411.4 273 69.2
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 1.7e-112 409.8 274 68.2
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 3.7e-112 408.7 272 67.6
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 4.8e-112 408.3 282 66.7
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 4.8e-112 408.3 244 78.7
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 3.1e-111 405.6 273 68.5
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 4.1e-111 405.2 282 66.3
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 1.2e-110 403.7 267 68.9
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 1.6e-110 403.3 267 67.8
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 1.7e-109 399.8 266 69.9
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 3.8e-109 398.7 274 66.1
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 3.8e-109 398.7 274 68.6
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 3.8e-109 398.7 295 63.4
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 4.2e-108 395.2 266 68.8
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 1.2e-105 387.1 278 65.8
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 4.4e-105 385.2 262 69.1
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 3.7e-104 382.1 252 68.7
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 6.3e-104 381.3 292 64.7
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 1.0e-98 364.0 256 67.2
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 4.0e-98 362.1 222 73.0
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 6.8e-98 361.3 256 66.8
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 1.2e-97 360.5 250 62.4
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 5.7e-97 358.2 246 69.5
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 2.2e-96 356.3 246 69.1
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 2.9e-96 355.9 237 69.6
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 3.6e-91 339.0 240 65.8
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 7.5e-89 331.3 236 61.0
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 3.7e-88 328.9 194 75.3
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 5.0e-85 318.5 173 83.8
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 6.6e-85 318.2 193 73.1
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 3.6e-83 312.4 218 63.8
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 4.1e-79 298.9 183 72.1
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 1.3e-77 293.9 261 56.3
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 2.3e-77 293.1 270 48.5
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 1.5e-76 290.4 238 55.5
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 9.5e-76 287.7 163 81.6
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 1.8e-74 283.5 194 68.6
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 3.1e-74 282.7 261 48.3
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 1.2e-62 244.2 136 77.2
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 4.6e-62 242.3 146 78.1
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 8.4e-56 221.5 139 71.9
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 3.2e-55 219.5 159 67.3
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.9e-53 212.6 138 73.9
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 3.9e-53 212.6 161 59.0
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.3e-52 209.1 131 75.6
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.3e-52 209.1 131 75.6
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 4.5e-49 199.1 126 68.3
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 8.4e-48 194.9 111 79.3
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 1.5e-44 184.1 150 62.7
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 4.2e-39 166.0 105 72.4
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 4.5e-33 146.0 241 32.0
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 1.9e-31 140.6 279 37.6
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 2.5e-31 140.2 159 48.4
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 8.2e-27 125.2 111 55.9
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 3.1e-26 123.2 95 61.1
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 3.8e-24 116.3 62 79.0
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 2.2e-19 100.5 68 67.6
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 1.8e-18 97.4 60 73.3
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 7.7e-17 92.0 44 88.6
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 7.7e-17 92.0 44 88.6
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 7.2e-15 85.5 55 61.8
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 5.2e-13 79.3 146 32.2
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 2.8e-11 73.6 41 82.9
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 8.2e-11 72.0 61 55.7
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 1.1e-10 71.6 61 55.7
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 7.0e-10 68.9 77 50.6
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 7.0e-10 68.9 77 50.6
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.2e-09 68.2 40 77.5
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.2e-09 68.2 40 77.5
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 1.7e-08 64.3 36 72.2
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 8.5e-08 62.0 37 70.3


User provided reference genes

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