Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 1.1e-72 276.6 142 100.0
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 1.5e-24 116.7 153 53.6
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 1.9e-24 116.3 147 49.0
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 9.4e-24 114.0 143 50.3
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 1.4e-22 110.2 151 49.0
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 1.5e-21 106.7 150 50.0
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 4.4e-21 105.1 149 51.0
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 4.4e-21 105.1 144 52.8
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 6.3e-20 101.3 143 51.7
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.3e-17 93.6 135 48.1
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 2.3e-17 92.8 138 48.6
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 5.0e-17 91.7 135 49.6
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 6.5e-17 91.3 148 46.6
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.1e-16 90.5 151 44.4
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.2e-16 88.6 130 46.2
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 5.5e-16 88.2 141 44.7
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 7.2e-16 87.8 134 48.5
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 7.2e-16 87.8 138 47.8
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.6e-15 85.5 130 44.6
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 3.6e-15 85.5 130 44.6
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 1.0e-14 84.0 142 47.2
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.4e-14 83.6 131 44.3
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 4.0e-14 82.0 173 41.6
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 6.8e-14 81.3 132 44.7
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 8.9e-14 80.9 173 40.5
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 1.2e-13 80.5 150 42.7
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 1.5e-13 80.1 174 41.4
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 2.0e-13 79.7 126 44.4
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.3e-12 77.0 172 39.0
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.8e-12 75.9 173 40.5
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.8e-12 75.9 173 38.7
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.8e-12 75.9 157 42.0
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.8e-12 75.9 157 42.7
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 4.9e-12 75.1 142 39.4
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 4.9e-12 75.1 145 43.4
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 6.3e-12 74.7 143 42.7
Lalb_Chr12g0203981 Lupinus albus HOM05D008176 ORTHO05D004477 1.4e-11 73.6 132 42.4
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.4e-11 73.6 142 43.7
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 3.1e-11 72.4 143 42.0
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 4.1e-11 72.0 132 42.4
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 5.4e-11 71.6 150 40.0
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 1.2e-10 70.5 138 39.9
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.2e-10 70.5 148 39.9
BolC9t53945H Brassica oleracea HOM05D010563 ORTHO05D012591 2.0e-10 69.7 132 42.4
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 2.0e-10 69.7 139 41.7
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.7e-10 69.3 161 40.4
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 2.7e-10 69.3 138 39.9
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 3.5e-10 68.9 142 40.1
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 3.5e-10 68.9 132 38.6
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 5.9e-10 68.2 155 33.5
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 5.9e-10 68.2 144 36.8
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 1.0e-09 67.4 149 38.3
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.0e-09 67.4 140 37.1
CARHR279260 Cardamine hirsuta HOM05D010563 ORTHO05D012591 1.3e-09 67.0 142 39.4
Carub.0008s2618 Capsella rubella HOM05D010563 ORTHO05D012591 2.3e-09 66.2 137 40.1
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 2.3e-09 66.2 133 39.1
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 2.3e-09 66.2 144 40.3
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 2.9e-09 65.9 140 42.9
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 3.8e-09 65.5 142 39.4
SGA_v2.0_scaffold108G30894 Striga asiatica HOM05D008176 ORTHO05D004477 3.8e-09 65.5 148 37.2
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 3.8e-09 65.5 150 38.0
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 5.0e-09 65.1 141 39.7
Ah.02g126210 Amaranthus hybridus HOM05D031888 ORTHO05D004477 6.6e-09 64.7 179 34.1
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 6.6e-09 64.7 141 41.1
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 8.6e-09 64.3 141 41.1
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 8.6e-09 64.3 137 40.1
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 8.6e-09 64.3 137 40.1
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 8.6e-09 64.3 137 38.7
Sc03g0000170 Simmondsia chinensis HOM05D031888 ORTHO05D004477 1.5e-08 63.5 114 42.1
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 2.5e-08 62.8 146 39.0
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 2.5e-08 62.8 142 36.6
AL8G42870 Arabidopsis lyrata HOM05D010563 ORTHO05D012591 5.6e-08 61.6 137 38.7
C09p10430 Brassica napus HOM05D010563 ORTHO05D012591 5.6e-08 61.6 132 40.9
BraA06t26144Z Brassica rapa HOM05D010563 ORTHO05D012591 7.3e-08 61.2 123 38.2
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 9.5e-08 60.8 141 38.3
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 9.5e-08 60.8 119 39.5
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.2e-07 60.5 144 36.8
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 1.6e-07 60.1 125 40.8
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 1.6e-07 60.1 128 38.3
C03p60780 Brassica napus HOM05D010563 ORTHO05D012591 2.1e-07 59.7 123 38.2
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 2.1e-07 59.7 126 38.9
AT5G65300 Arabidopsis thaliana HOM05D010563 ORTHO05D012591 2.8e-07 59.3 137 37.2
A06p32160 Brassica napus HOM05D010563 ORTHO05D012591 2.8e-07 59.3 128 40.6
CANSAT01G0943 Cannabis sativa HOM05D013332 ORTHO05D004477 2.8e-07 59.3 154 35.1
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 2.8e-07 59.3 122 36.1
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 2.8e-07 59.3 139 38.1
Lalb_Chr08g0242201 Lupinus albus HOM05D008046 ORTHO05D004477 2.8e-07 59.3 156 35.3
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 2.8e-07 59.3 155 33.5
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.8e-07 59.3 132 39.4
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 3.6e-07 58.9 144 38.2
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 3.6e-07 58.9 167 31.7
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 3.6e-07 58.9 120 39.2
Thhalv10005051m.g Eutrema salsugineum HOM05D010563 ORTHO05D012591 4.7e-07 58.5 143 35.7
Sabra05G0058900 Salix brachista HOM05D008176 ORTHO05D004477 4.7e-07 58.5 148 37.2
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 6.1e-07 58.2 140 37.1
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 6.1e-07 58.2 123 39.8
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 1.0e-06 57.4 125 36.0
BolC3t18337H Brassica oleracea HOM05D010563 ORTHO05D012591 1.4e-06 57.0 126 39.7
Migut.H02240 Erythranthe guttata HOM05D008046 ORTHO05D004477 1.8e-06 56.6 145 37.9
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 2.3e-06 56.2 140 35.7
Gohir.D12G082301 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.0e-06 55.8 140 33.6
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 4.0e-06 55.5 143 35.0
Psat5g090880 Pisum sativum HOM05D008176 ORTHO05D004477 5.2e-06 55.1 142 33.8
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 5.2e-06 55.1 130 33.8
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 6.8e-06 54.7 137 35.8
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 6.8e-06 54.7 146 36.3
VMungo0251G0397 Vigna mungo HOM05D008176 ORTHO05D004477 6.8e-06 54.7 137 37.2
BraA09t36549Z Brassica rapa HOM05D010563 ORTHO05D012591 8.9e-06 54.3 132 37.9


User provided reference genes

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