Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 5.2e-99 364.4 184 100.0
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 1.7e-70 269.6 179 72.1
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 2.5e-61 239.2 180 63.9
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 7.3e-61 237.7 181 63.5
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 3.4e-58 228.8 185 60.5
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 3.4e-58 228.8 186 61.3
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 2.9e-57 225.7 184 61.4
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 1.9e-56 223.0 179 58.1
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 5.4e-56 221.5 186 59.1
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 1.2e-55 220.3 181 58.0
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.7e-55 219.2 186 58.6
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 4.6e-55 218.4 182 57.7
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 4.6e-55 218.4 182 58.8
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 1.7e-54 216.5 186 57.0
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 1.7e-54 216.5 180 56.1
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 1.7e-54 216.5 172 59.9
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 2.3e-54 216.1 180 56.7
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 3.9e-54 215.3 180 56.7
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 6.6e-54 214.5 180 56.1
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 1.1e-53 213.8 180 57.2
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 1.5e-53 213.4 180 56.7
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 2.5e-53 212.6 180 57.8
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 4.3e-53 211.8 176 57.4
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 4.3e-53 211.8 176 57.4
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 5.6e-53 211.5 172 61.6
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 7.3e-53 211.1 180 56.7
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 9.6e-53 210.7 175 60.0
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 1.3e-52 210.3 170 58.8
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 2.1e-52 209.5 180 57.8
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 2.8e-52 209.1 180 56.1
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 8.1e-52 207.6 173 57.2
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 1.4e-51 206.8 169 62.1
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 1.4e-51 206.8 180 57.8
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 9.0e-51 204.1 173 57.2
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 9.0e-51 204.1 170 55.9
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 3.4e-50 202.2 181 56.4
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 5.8e-50 201.4 179 57.5
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 5.8e-50 201.4 176 52.8
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 7.6e-50 201.1 172 58.7
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 1.7e-49 199.9 171 57.3
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 1.7e-49 199.9 179 57.0
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 2.2e-49 199.5 178 57.9
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 6.4e-49 198.0 222 48.6
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 1.1e-48 197.2 176 54.5
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 1.4e-48 196.8 185 54.6
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 1.9e-48 196.4 174 54.0
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 5.4e-48 194.9 182 53.3
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 1.2e-47 193.7 181 55.2
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 1.2e-47 193.7 179 55.3
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 2.1e-47 193.0 176 56.8
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 2.7e-47 192.6 185 54.6
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 3.5e-47 192.2 180 54.4
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 4.6e-47 191.8 186 51.1
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 7.9e-47 191.0 189 55.0
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 7.9e-47 191.0 189 55.0
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 7.9e-47 191.0 182 54.4
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 1.8e-46 189.9 172 55.2
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 1.8e-46 189.9 172 55.2
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 3.0e-46 189.1 181 55.8
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 1.1e-45 187.2 191 53.9
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.5e-45 186.8 188 51.6
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 2.5e-45 186.0 188 51.6
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 3.3e-45 185.7 179 54.7
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 3.3e-45 185.7 179 54.7
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 4.3e-45 185.3 168 52.4
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 4.3e-45 185.3 182 51.1
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 5.6e-45 184.9 179 49.2
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 2.1e-44 183.0 175 53.7
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 6.2e-44 181.4 169 54.4
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 3.1e-43 179.1 182 51.6
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 5.3e-43 178.3 176 54.5
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 9.0e-43 177.6 192 49.5
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 1.5e-42 176.8 174 49.4
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 1.5e-42 176.8 189 50.3
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 2.0e-42 176.4 173 50.3
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 7.6e-42 174.5 187 48.7
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 2.9e-41 172.6 168 49.4
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 3.8e-41 172.2 173 50.3
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 5.5e-40 168.3 179 48.6
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 1.6e-39 166.8 180 46.7
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 1.6e-39 166.8 182 48.9
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 2.1e-39 166.4 152 51.3
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 2.1e-39 166.4 163 52.8
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 3.5e-39 165.6 194 48.5
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 1.5e-37 160.2 190 45.8
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 9.6e-37 157.5 177 48.6
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 1.3e-36 157.1 119 63.9
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 1.6e-36 156.8 169 51.5
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 3.7e-36 155.6 174 49.4
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 4.8e-36 155.2 161 49.7
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.1e-35 154.1 119 59.7
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 2.4e-35 152.9 182 47.3
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 5.8e-34 148.3 171 42.7
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 7.6e-34 147.9 169 45.6
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 2.2e-33 146.4 193 40.9
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 2.2e-33 146.4 176 40.3
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 8.4e-33 144.4 176 47.2
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 2.5e-32 142.9 92 68.5
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 5.1e-30 135.2 178 41.0
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 3.7e-28 129.0 223 36.3
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 1.8e-27 126.7 168 44.0
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 5.3e-27 125.2 198 41.9
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 5.3e-27 125.2 198 41.9
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 3.4e-26 122.5 145 44.1
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 5.9e-26 121.7 83 67.5
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 1.0e-25 120.9 146 41.8
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 2.5e-24 116.3 176 38.1
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 3.2e-24 115.9 92 57.6
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 7.2e-24 114.8 80 67.5
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 8.8e-22 107.8 160 39.4
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 1.5e-21 107.1 178 36.5
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 2.8e-20 102.8 147 38.8
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 4.1e-19 99.0 135 41.5
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 2.6e-18 96.3 71 56.3
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 5.0e-17 92.0 147 40.1
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 3.9e-14 82.4 70 54.3
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.5e-13 80.5 89 51.7
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 6.3e-12 75.1 82 50.0
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 3.5e-10 69.3 98 34.7
Zm00001eb345970 Zea mays HOM05D001617 ORTHO05D008611 6.1e-07 58.5 81 35.8


User provided reference genes

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