Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 4.9e-137 491.1 246 100.0
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 6.3e-108 394.4 246 80.5
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 1.3e-105 386.7 247 79.8
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 3.2e-104 382.1 246 78.5
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 3.2e-104 382.1 240 79.2
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 3.2e-104 382.1 240 79.2
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 1.4e-102 376.7 247 77.3
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 2.8e-100 369.0 237 78.5
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 2.4e-99 365.9 234 78.6
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 4.1e-99 365.2 243 77.4
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 3.4e-98 362.1 247 75.7
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 3.4e-98 362.1 212 84.0
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 4.5e-98 361.7 247 73.3
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 5.9e-98 361.3 234 79.1
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 5.9e-98 361.3 246 75.2
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 6.5e-97 357.8 239 77.0
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 1.1e-96 357.1 243 76.1
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.4e-96 356.7 243 74.9
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 5.5e-96 354.8 245 73.5
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 7.2e-96 354.4 243 75.7
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 9.4e-96 354.0 242 75.6
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 9.4e-96 354.0 243 74.9
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 1.6e-95 353.2 248 73.0
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 3.6e-95 352.1 244 73.4
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 3.9e-94 348.6 210 82.4
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 6.7e-94 347.8 239 74.9
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 6.7e-94 347.8 246 72.8
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 9.7e-93 344.0 246 70.3
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 1.3e-92 343.6 207 79.2
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 1.7e-92 343.2 245 73.5
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 3.7e-92 342.0 246 70.3
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 4.8e-92 341.7 246 72.0
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 3.1e-91 339.0 229 72.5
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 3.1e-91 339.0 242 69.0
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 1.2e-90 337.0 202 82.2
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 2.0e-90 336.3 199 82.4
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 2.6e-90 335.9 199 82.4
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 5.9e-90 334.7 218 75.7
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 1.3e-89 333.6 213 76.1
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 1.3e-89 333.6 198 81.3
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.2e-89 332.8 199 79.4
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 2.9e-89 332.4 223 73.5
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 2.9e-89 332.4 246 68.7
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 5.0e-89 331.6 228 73.7
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 8.5e-89 330.9 228 75.0
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 1.9e-88 329.7 228 74.6
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 1.9e-88 329.7 222 74.3
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 2.5e-88 329.3 215 74.9
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 5.5e-88 328.2 198 80.8
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 4.7e-87 325.1 200 78.0
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 6.1e-87 324.7 233 70.8
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 1.0e-86 323.9 198 77.8
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 1.0e-86 323.9 231 71.9
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 2.3e-86 322.8 233 72.5
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 3.0e-86 322.4 248 66.9
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 3.0e-86 322.4 205 74.6
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 4.0e-86 322.0 206 79.6
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 6.7e-86 321.2 243 70.0
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 6.7e-86 321.2 244 66.8
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 6.7e-86 321.2 205 74.1
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 8.8e-86 320.9 250 66.8
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 8.8e-86 320.9 217 71.9
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 1.1e-85 320.5 239 69.0
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 1.5e-85 320.1 221 74.2
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 4.4e-85 318.5 229 71.2
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 4.4e-85 318.5 229 71.2
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 9.7e-85 317.4 224 73.2
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 1.3e-84 317.0 242 68.6
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 1.3e-84 317.0 228 71.9
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 2.2e-84 316.2 196 77.6
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 2.8e-84 315.8 225 70.2
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 2.8e-84 315.8 229 70.7
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 2.8e-84 315.8 210 73.3
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 3.7e-84 315.5 198 76.8
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 6.3e-84 314.7 229 70.3
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 8.2e-84 314.3 229 70.3
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 1.8e-83 313.2 198 76.3
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 7.0e-83 311.2 210 73.8
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 2.7e-82 309.3 214 74.3
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 2.7e-82 309.3 239 66.9
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 3.5e-82 308.9 228 68.4
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 4.5e-82 308.5 198 73.7
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 5.9e-82 308.1 213 71.4
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 2.5e-80 302.8 204 72.5
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 7.2e-80 301.2 175 84.6
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.8e-78 296.6 202 75.2
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 4.8e-76 288.5 205 68.8
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 2.4e-75 286.2 225 65.8
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 1.7e-73 280.0 194 68.6
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 5.5e-72 275.0 237 58.6
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 3.3e-64 249.2 187 64.2
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.0e-61 240.0 160 73.8
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 3.7e-60 235.7 176 70.5
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 5.0e-57 225.3 239 52.7
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 1.1e-56 224.2 133 82.0
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.4e-54 217.2 239 52.3
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 3.4e-53 212.6 143 76.2
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.0e-49 201.1 159 62.9
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 2.5e-48 196.4 207 47.3
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 5.8e-45 185.3 152 57.2
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 5.8e-45 185.3 244 45.9
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 3.5e-42 176.0 200 44.0
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 4.3e-40 169.1 131 62.6
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 6.2e-39 165.2 119 68.9
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 6.2e-39 165.2 144 63.9
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.9e-35 153.7 124 66.9
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.6e-34 150.6 112 66.1
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 1.7e-33 147.1 122 61.5
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 1.5e-32 144.1 100 73.0
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 1.4e-30 137.5 135 57.8
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 3.1e-30 136.3 98 65.3
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 4.0e-30 136.0 144 45.1
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 5.8e-29 132.1 101 70.3
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 1.7e-28 130.6 213 36.2
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 5.4e-27 125.6 205 36.6
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 8.4e-20 101.7 71 63.4
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 1.0e-17 94.7 52 82.7
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 4.5e-13 79.3 51 72.5
vmacro18230 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.9e-11 73.9 60 56.7
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.4e-11 73.6 64 54.7
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 4.2e-11 72.8 55 56.4
vmacro18566 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.2e-10 71.2 51 60.8
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 7.9e-10 68.6 68 55.9
Ah.03g140070 Amaranthus hybridus HOM05D006387 ORTHO05D008533 2.1e-07 60.5 53 60.4
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 1.1e-06 58.2 43 69.8


User provided reference genes

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