Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1259 Acer truncatum HOM05D006593 ORTHO05D008512 0.0e+00 1338.9 687 100.0
Ciclev10003755m.g Citrus clementina HOM05D006593 ORTHO05D008512 2.1e-254 882.5 684 68.7
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 1.9e-242 842.8 707 64.8
Manes.13G098700 Manihot esculenta HOM05D006593 ORTHO05D008512 6.6e-240 834.3 691 64.4
QL06p035616 Quercus lobata HOM05D006593 ORTHO05D008512 2.4e-237 825.9 688 64.2
CiPaw.07G048200 Carya illinoinensis HOM05D006593 ORTHO05D008512 2.2e-235 819.3 689 62.7
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.1e-234 817.0 685 63.5
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 2.4e-234 815.8 685 63.8
Dinv01622 Davidia involucrata HOM05D006593 ORTHO05D008512 1.2e-233 813.5 693 62.3
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.1e-230 802.7 685 62.6
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 5.3e-229 798.1 688 62.6
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 4.4e-228 795.0 695 61.6
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 6.0e-225 784.6 693 61.0
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 1.7e-224 783.1 690 60.6
Potri.007G010600 Populus trichocarpa HOM05D006593 ORTHO05D008512 1.3e-222 776.9 693 62.0
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 1.2e-220 770.4 689 60.8
Actinidia06518 Actinidia chinensis HOM05D006593 ORTHO05D008512 2.0e-220 769.6 686 59.5
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 2.2e-219 766.1 690 61.4
Sabra07G0008000 Salix brachista HOM05D006593 ORTHO05D008512 4.6e-217 758.4 687 61.4
Duzib147G0804 Durio zibethinus HOM05D006593 ORTHO05D008512 7.9e-217 757.7 685 60.3
CANSAT01G0713 Cannabis sativa HOM05D006593 ORTHO05D008512 8.1e-214 747.7 692 59.8
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 1.1e-213 747.3 686 58.5
Prupe.6G198700 Prunus persica HOM05D006593 ORTHO05D008512 9.0e-213 744.2 690 59.1
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 1.2e-212 743.8 692 58.8
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 5.8e-212 741.5 692 58.7
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 3.8e-211 738.8 692 58.4
Glyma.01G023700 Glycine max HOM05D006593 ORTHO05D008512 2.8e-206 722.6 685 56.1
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 2.6e-204 716.1 685 56.4
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 1.4e-202 710.3 686 55.8
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 2.1e-201 706.4 687 56.2
Cpa.g.sc55.33 Carica papaya HOM05D006593 ORTHO05D008512 2.7e-201 706.1 687 58.4
THA.LOC104824911 Tarenaya hassleriana HOM05D006593 ORTHO05D008512 6.1e-201 704.9 694 57.8
Nn5g29896 Nelumbo nucifera HOM05D006593 ORTHO05D008512 3.0e-200 702.6 690 55.4
Lju188A1G72 Lonicera japonica HOM05D006593 ORTHO05D008512 8.7e-200 701.0 648 57.1
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 4.3e-199 698.7 688 54.2
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 9.7e-199 697.6 690 54.9
Eucgr.I00552 Eucalyptus grandis HOM05D006593 ORTHO05D008512 4.8e-198 695.3 690 54.2
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 5.3e-197 691.8 686 56.4
PGR031G1437 Punica granatum HOM05D006593 ORTHO05D008512 1.3e-195 687.2 677 55.5
Aqoxy5G01304_Aqoxy5G01305 Aquilegia oxysepala HOM05D006593 ORTHO05D008512 1.8e-192 676.8 692 53.2
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 3.0e-192 676.0 697 55.4
AL4G12066 Arabidopsis lyrata HOM05D006593 ORTHO05D008512 3.3e-191 672.5 698 55.2
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 2.2e-190 669.8 688 56.1
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 3.7e-190 669.1 558 63.8
Sp4g01570 Schrenkiella parvula HOM05D006593 ORTHO05D008512 4.8e-190 668.7 697 55.2
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.4e-189 667.2 685 54.3
A09p57440 Brassica napus HOM05D006593 ORTHO05D008512 2.4e-189 666.4 691 55.6
BraA09t41136Z Brassica rapa HOM05D006593 ORTHO05D008512 2.4e-189 666.4 691 55.6
BcaC07g41050 Brassica carinata HOM05D006593 ORTHO05D008512 1.5e-188 663.7 690 55.8
C08p40530 Brassica napus HOM05D006593 ORTHO05D008512 1.5e-188 663.7 690 55.8
BolC8t51623H Brassica oleracea HOM05D006593 ORTHO05D008512 2.6e-188 662.9 690 55.5
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 1.3e-187 660.6 697 54.8
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 3.8e-187 659.1 685 53.7
PGSC0003DMG400016138 Solanum tuberosum HOM05D006593 ORTHO05D008512 4.2e-186 655.6 687 54.9
BcaB08g35096 Brassica carinata HOM05D006593 ORTHO05D008512 2.1e-185 653.3 689 54.6
Solyc11g010550.2 Solanum lycopersicum HOM05D006593 ORTHO05D008512 2.7e-185 652.9 687 54.7
Sopen11g005350 Solanum pennellii HOM05D006593 ORTHO05D008512 7.9e-185 651.4 687 54.6
arahy.Tifrunner.gnm1.ann1.67PG0W Arachis hypogaea HOM05D006593 ORTHO05D008512 2.3e-184 649.8 702 51.3
arahy.Tifrunner.gnm1.ann1.ZAKH7Z Arachis hypogaea HOM05D006593 ORTHO05D008512 2.3e-184 649.8 702 51.3
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 5.1e-184 648.7 554 61.2
AUR62017964 Chenopodium quinoa HOM05D006593 ORTHO05D008512 2.0e-183 646.7 691 52.4
vmacro13002 Vaccinium macrocarpon HOM05D006593 ORTHO05D008512 7.4e-183 644.8 734 51.5
DCAR_014189 Daucus carota HOM05D006593 ORTHO05D008512 1.4e-181 640.6 656 54.3
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 1.8e-181 640.2 692 51.0
AUR62003656 Chenopodium quinoa HOM05D006593 ORTHO05D008512 2.4e-181 639.8 678 52.7
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 2.6e-180 636.3 683 52.0
Nitab4.5_0001468g0100 Nicotiana tabacum HOM05D006593 ORTHO05D008512 7.7e-180 634.8 688 53.6
Carub.0004s0170 Capsella rubella HOM05D006593 ORTHO05D008512 1.5e-178 630.6 660 55.2
Oeu012466.1 Olea europaea HOM05D006593 ORTHO05D008512 2.5e-178 629.8 724 51.7
Hund16537 Selenicereus undatus HOM05D006593 ORTHO05D008512 1.2e-177 627.5 687 52.3
Nitab4.5_0004153g0020 Nicotiana tabacum HOM05D006593 ORTHO05D008512 4.7e-177 625.5 688 53.3
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 7.7e-172 608.2 680 52.1
Migut.K00792 Erythranthe guttata HOM05D006593 ORTHO05D008512 6.5e-171 605.1 686 50.3
Psat2g085480 Pisum sativum HOM05D006593 ORTHO05D008512 3.2e-170 602.8 719 48.8
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 2.7e-169 599.7 673 49.8
SGA_v2.0_scaffold45G17238 Striga asiatica HOM05D006593 ORTHO05D008512 7.5e-167 591.7 652 51.7
Peaxi162Scf00778g00014 Petunia axillaris HOM05D006593 ORTHO05D008512 3.7e-166 589.3 658 52.7
Eucgr.I00548 Eucalyptus grandis HOM05D006593 ORTHO05D008512 5.4e-165 585.5 687 48.5
SalBow5G0109 Salvia bowleyana HOM05D006593 ORTHO05D008512 2.9e-163 579.7 719 48.1
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 3.0e-160 569.7 701 47.8
HanXRQChr17g0550591 Helianthus annuus HOM05D006593 ORTHO05D008512 1.4e-157 560.8 647 48.7
CAN.G1843.3 Capsicum annuum HOM05D006593 ORTHO05D008512 4.2e-154 549.3 685 48.6
Phvul.002G147900 Phaseolus vulgaris HOM05D006593 ORTHO05D008512 3.0e-152 543.1 554 53.6
unitig_748.g8644 Utricularia gibba HOM05D006593 ORTHO05D008512 2.6e-151 540.0 688 46.2
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 1.1e-146 524.6 676 46.7
VMungo1215G1341 Vigna mungo HOM05D006593 ORTHO05D008512 3.6e-145 519.6 545 51.9
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 2.9e-142 510.0 708 43.9
Lalb_Chr05g0216291 Lupinus albus HOM05D006593 ORTHO05D008512 1.2e-140 504.6 531 51.6
Zm00001eb257050 Zea mays HOM05D006593 ORTHO05D008512 6.8e-136 488.8 708 42.7
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 8.1e-129 465.3 648 44.6
Eucgr.I00472 Eucalyptus grandis HOM05D006593 ORTHO05D008512 8.9e-128 461.8 489 53.0
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 3.0e-115 420.2 752 37.8
SEGI_04856 Sequoiadendron giganteum HOM05D006593 ORTHO05D008512 3.9e-99 366.7 649 37.4
SEGI_21075 Sequoiadendron giganteum HOM05D006593 ORTHO05D008512 3.9e-99 366.7 649 37.4
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 1.5e-98 364.8 751 35.6
HPP92_005969 Vanilla planifolia HOM05D006593 ORTHO05D008512 3.1e-80 303.9 347 47.6
HPP92_005976 Vanilla planifolia HOM05D006593 ORTHO05D008512 3.1e-80 303.9 347 47.6
MELO3C007718.2 Cucumis melo HOM05D006593 ORTHO05D008512 4.3e-74 283.5 635 35.0
CDE03G0370 Ceratophyllum demersum HOM05D006593 ORTHO05D008512 1.2e-60 238.8 267 48.7
Psat2g043360 Pisum sativum HOM05D006593 ORTHO05D008512 3.6e-60 237.3 260 50.8
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 9.1e-56 222.6 681 28.8
CARHR113720 Cardamine hirsuta HOM05D006593 ORTHO05D008512 1.2e-50 205.7 168 66.1
CAN.G1724.3 Capsicum annuum HOM05D006593 ORTHO05D008512 3.4e-50 204.1 233 56.2
Lalb_Chr05g0216281 Lupinus albus HOM05D006593 ORTHO05D008512 4.8e-49 200.3 154 68.8
GSVIVG01006735001 Vitis vinifera HOM05D006593 ORTHO05D008512 4.1e-48 197.2 186 56.5
Psat0ss25160g0040 Pisum sativum HOM05D000068 ORTHO05D020743 6.3e-41 173.3 176 54.5
GSVIVG01006089001 Vitis vinifera HOM05D006593 ORTHO05D008512 7.0e-40 169.9 131 68.7
GSVIVG01006734001 Vitis vinifera HOM05D006593 ORTHO05D008512 1.6e-23 115.5 76 75.0
Psat6g040440 Pisum sativum HOM05D000610 ORTHO05D004774 2.0e-23 115.2 156 42.9
CBR_g48853 Chara braunii HOM05D006593 ORTHO05D008512 4.7e-20 104.0 232 34.9
HPP92_005975 Vanilla planifolia HOM05D006593 ORTHO05D008512 9.8e-18 96.3 156 39.7
Glyma.13G116800 Glycine max HOM05D004630 ORTHO05D005727 6.4e-09 67.0 715 21.7
Lj4g0015635 Lotus japonicus HOM05D004630 ORTHO05D005727 1.1e-08 66.2 698 21.8
VMungo1215G1222 Vigna mungo HOM05D004630 ORTHO05D005727 1.4e-08 65.9 706 22.2
Cc03_g11340 Coffea canephora HOM05D004630 ORTHO05D005727 4.1e-08 64.3 714 22.5
SalBow6G4274 Salvia bowleyana HOM05D004630 ORTHO05D005727 4.1e-08 64.3 714 21.3
Lj2g0001674 Lotus japonicus HOM05D004630 ORTHO05D005727 7.1e-08 63.5 701 22.4
Nitab4.5_0004432g0030 Nicotiana tabacum HOM05D004630 ORTHO05D005727 7.1e-08 63.5 307 23.5
BraA10t44274Z Brassica rapa HOM05D004630 ORTHO05D005727 9.2e-08 63.2 342 24.3
Mapoly0027s0070 Marchantia polymorpha HOM05D004630 ORTHO05D005727 1.2e-07 62.8 245 24.1
CARHR195960 Cardamine hirsuta HOM05D004630 ORTHO05D005727 1.6e-07 62.4 351 21.9
Rhsim10G0128800 Rhododendron simsii HOM05D004630 ORTHO05D005727 2.1e-07 62.0 240 27.1
Phvul.003G124900 Phaseolus vulgaris HOM05D004630 ORTHO05D005727 2.7e-07 61.6 704 20.6
HPP92_005968 Vanilla planifolia HOM05D006593 ORTHO05D008512 2.7e-07 61.6 48 60.4
Thhalv10012592m.g Eutrema salsugineum HOM05D004630 ORTHO05D005727 4.6e-07 60.8 714 22.5
Ca_21358_v3 Cicer arietinum L. HOM05D004630 ORTHO05D005727 6.0e-07 60.5 702 20.9
Medtr4g123557 Medicago truncatula HOM05D004630 ORTHO05D005727 7.8e-07 60.1 702 20.8
Lalb_Chr12g0200461 Lupinus albus HOM05D004630 ORTHO05D005727 1.7e-06 58.9 715 20.8
Os10g0170300 Oryza sativa ssp. japonica HOM05D004630 ORTHO05D005727 6.6e-06 57.0 700 20.7
Thecc.07G164200 Theobroma cacao HOM05D004630 ORTHO05D005727 6.6e-06 57.0 315 25.1
Sc13g0008160 Simmondsia chinensis HOM05D004630 ORTHO05D005727 8.6e-06 56.6 322 22.7
PGSC0003DMG400019762 Solanum tuberosum HOM05D006593 ORTHO05D008512 8.6e-06 56.6 32 78.1


User provided reference genes

Program Settings