Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 3.3e-95 351.7 172 100.0
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 9.5e-71 270.4 165 77.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.1e-70 269.2 172 75.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.1e-70 269.2 172 75.6
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.8e-70 268.9 168 75.6
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.1e-69 266.9 167 75.4
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.2e-68 263.5 166 75.9
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 7.6e-68 260.8 165 76.4
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 7.6e-68 260.8 167 75.4
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 9.9e-68 260.4 167 75.4
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 6.4e-67 257.7 163 73.6
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.4e-67 257.7 160 75.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.4e-66 256.5 172 72.1
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.4e-66 256.5 165 73.9
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.9e-66 256.1 166 74.1
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 4.1e-66 255.0 164 73.8
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.1e-66 255.0 164 75.0
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 7.1e-66 254.2 162 74.7
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.1e-66 254.2 168 71.4
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.2e-65 253.4 167 72.5
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.2e-65 253.4 164 74.4
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.6e-65 253.1 165 72.7
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.1e-65 252.7 168 71.4
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.7e-65 252.3 162 73.5
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.7e-65 252.3 168 71.4
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.5e-65 251.9 160 74.4
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.5e-65 251.9 165 73.3
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 4.6e-65 251.5 168 70.8
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.6e-65 251.5 163 73.0
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 6.0e-65 251.1 165 72.1
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 6.0e-65 251.1 160 73.8
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 7.8e-65 250.8 168 70.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.0e-64 250.4 169 70.4
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.3e-64 250.0 168 70.8
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-64 250.0 168 70.8
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.0e-64 248.8 168 69.6
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.0e-64 248.8 165 70.3
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.9e-64 248.4 163 73.0
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 5.1e-64 248.1 168 69.6
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 6.6e-64 247.7 160 71.9
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 6.6e-64 247.7 161 72.7
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 8.6e-64 247.3 160 71.9
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 8.6e-64 247.3 168 69.6
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.1e-63 246.9 163 69.9
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.1e-63 246.9 168 69.0
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.9e-63 246.1 163 71.2
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 2.5e-63 245.7 162 72.8
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.3e-63 245.4 168 69.6
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.3e-63 245.4 160 72.5
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 4.3e-63 245.0 167 69.5
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 5.6e-63 244.6 160 71.2
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 5.6e-63 244.6 168 68.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.6e-63 244.6 163 71.8
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 5.6e-63 244.6 168 69.0
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.3e-63 244.2 168 69.0
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.3e-63 244.2 168 69.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 7.3e-63 244.2 163 71.2
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 9.6e-63 243.8 170 70.6
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 9.6e-63 243.8 168 69.6
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 9.6e-63 243.8 163 71.8
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 9.6e-63 243.8 163 71.8
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 9.6e-63 243.8 168 67.9
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.2e-62 243.4 160 70.0
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.6e-62 243.0 160 70.6
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.6e-62 243.0 160 70.6
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.6e-62 243.0 152 77.0
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.1e-62 242.7 160 71.2
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.1e-62 242.7 168 67.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 2.1e-62 242.7 162 71.6
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.8e-62 242.3 160 70.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.6e-62 241.9 163 71.2
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 3.6e-62 241.9 168 69.0
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.7e-62 241.5 167 68.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.7e-62 241.5 166 68.1
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 6.2e-62 241.1 166 68.7
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 6.2e-62 241.1 160 69.4
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 8.1e-62 240.7 160 69.4
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.1e-61 240.4 160 69.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.1e-61 240.4 160 69.4
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.1e-61 240.4 168 66.1
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.1e-61 240.4 160 71.9
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.1e-61 240.4 168 67.9
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.4e-61 240.0 166 68.7
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-61 240.0 168 66.7
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.4e-61 240.0 166 68.1
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.4e-61 240.0 160 70.0
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.4e-61 240.0 166 68.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.4e-61 240.0 168 67.9
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 2.4e-61 239.2 168 66.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 2.4e-61 239.2 160 68.8
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.4e-61 239.2 160 68.8
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.4e-61 239.2 168 69.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 4.0e-61 238.4 168 66.1
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 4.0e-61 238.4 168 66.7
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 5.2e-61 238.0 166 68.7
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 5.2e-61 238.0 158 68.4
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 9.0e-61 237.3 160 68.8
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.2e-60 236.9 169 68.0
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.5e-60 236.5 166 67.5
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.0e-60 236.1 161 69.6
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 3.4e-60 235.3 168 66.7
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 4.4e-60 235.0 174 64.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 5.8e-60 234.6 172 66.3
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.7e-59 233.0 169 65.7
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.2e-59 232.6 166 71.1
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.2e-59 232.6 169 65.1
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.9e-59 231.5 164 66.5
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 8.4e-59 230.7 166 71.1
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.4e-59 230.7 166 71.1
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 8.4e-59 230.7 168 64.9
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.4e-58 229.9 169 63.9
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.9e-58 229.6 164 65.9
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.9e-58 229.6 168 64.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.4e-58 229.2 166 63.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 3.2e-58 228.8 160 65.0
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.2e-58 228.4 164 65.2
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.7e-57 225.7 169 65.1
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.7e-57 225.7 168 61.3
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.5e-57 225.3 166 69.3
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.0e-56 222.2 180 65.6
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 5.1e-56 221.5 167 62.3
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 8.7e-56 220.7 158 65.8
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.5e-55 219.2 164 62.2
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 9.6e-55 217.2 168 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.3e-54 216.9 157 63.1
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 2.8e-54 215.7 162 64.2
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.4e-53 213.4 161 63.4
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.4e-53 212.6 160 61.2
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 2.4e-53 212.6 168 58.9
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.0e-53 211.8 170 61.2
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 5.3e-53 211.5 164 59.8
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.9e-53 211.1 168 61.3
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 2.0e-52 209.5 161 67.7
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 4.5e-52 208.4 160 59.4
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-51 206.8 161 61.5
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.3e-51 206.8 166 62.7
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.7e-51 206.5 160 60.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.2e-51 206.1 168 60.1
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.4e-51 204.1 171 59.1
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 8.4e-51 204.1 160 58.1
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.4e-50 202.6 155 60.6
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.6e-49 199.9 131 69.5
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 2.1e-49 199.5 134 68.7
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.7e-49 199.1 164 58.5
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.9e-48 195.3 159 59.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.7e-48 194.1 152 59.2
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.9e-47 193.0 163 60.1
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.6e-47 191.4 165 58.2
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.6e-47 190.7 132 68.9
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.7e-46 188.7 123 73.2
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.4e-45 186.0 137 67.2
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 7.6e-44 181.0 159 52.8
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.7e-41 172.6 133 63.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.5e-41 172.2 127 64.6
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.0e-40 170.6 125 64.0
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.3e-40 170.2 162 53.7
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.3e-38 163.7 127 59.8
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.8e-38 161.8 168 51.8
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.0e-36 156.4 159 52.8
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.6e-36 154.5 99 73.7
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-35 153.3 164 50.0
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.2e-35 152.9 164 50.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.2e-35 152.9 89 76.4
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.9e-35 151.8 164 50.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.0e-33 144.8 116 62.9
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.5e-31 140.2 90 73.3
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.3e-27 127.1 150 44.0
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 7.2e-26 121.3 91 60.4
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 3.6e-25 119.0 71 77.5
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 3.3e-23 112.5 91 54.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.8e-22 109.4 168 41.1
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.1e-16 88.6 84 50.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.7e-12 74.7 51 72.5
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.0e-11 74.3 155 36.1
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 8.0e-09 64.7 69 47.8
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.0e-08 64.3 180 30.0
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 8.8e-08 61.2 171 29.2
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 8.8e-08 61.2 64 42.2
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.5e-07 60.5 86 43.0
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-07 59.7 35 74.3
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 3.3e-07 59.3 33 78.8
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.7e-07 57.8 33 75.8


User provided reference genes

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