Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1245 Acer truncatum HOM05D004726 ORTHO05D005986 4.3e-194 681.0 316 100.0
Cfa007289 Carpinus fangiana HOM05D004726 ORTHO05D005986 2.9e-166 588.6 303 87.8
HanXRQChr14g0451431 Helianthus annuus HOM05D004726 ORTHO05D005986 2.5e-165 585.5 309 86.4
CiPaw.03G049600 Carya illinoinensis HOM05D004726 ORTHO05D005986 7.2e-165 583.9 310 84.5
GSVIVG01003968001 Vitis vinifera HOM05D004726 ORTHO05D005986 2.7e-164 582.0 306 86.6
COL.COLO4_29260 Corchorus olitorius HOM05D004726 ORTHO05D005986 3.6e-164 581.6 303 86.5
TWI56G1181 Tripterygium wilfordii HOM05D004726 ORTHO05D005986 3.6e-164 581.6 302 87.7
QL02p073257 Quercus lobata HOM05D004726 ORTHO05D005986 4.6e-164 581.3 309 86.1
Sabra16G0217200 Salix brachista HOM05D004726 ORTHO05D005986 4.6e-164 581.3 305 86.6
Nn3g16582 Nelumbo nucifera HOM05D004726 ORTHO05D005986 6.1e-164 580.9 309 87.1
Manes.17G107900 Manihot esculenta HOM05D004726 ORTHO05D005986 2.3e-163 578.9 309 86.4
Dinv33391 Davidia involucrata HOM05D004726 ORTHO05D005986 3.0e-163 578.6 307 86.3
Potri.001G336400 Populus trichocarpa HOM05D004726 ORTHO05D005986 3.0e-163 578.6 305 85.9
Prupe.3G298800 Prunus persica HOM05D004726 ORTHO05D005986 3.9e-163 578.2 304 86.5
Actinidia36156 Actinidia chinensis HOM05D004726 ORTHO05D005986 5.1e-163 577.8 304 85.9
ClCG05G012910 Citrullus lanatus HOM05D004726 ORTHO05D005986 5.1e-163 577.8 305 85.2
Gohir.D09G032300 Gossypium hirsutum HOM05D004726 ORTHO05D005986 1.5e-162 576.2 305 84.3
Gorai.006G037200 Gossypium raimondii HOM05D004726 ORTHO05D005986 1.5e-162 576.2 305 84.3
arahy.Tifrunner.gnm1.ann1.Q8ZL0R Arachis hypogaea HOM05D004726 ORTHO05D005986 2.5e-162 575.5 302 84.8
Cpa.g.sc130.48 Carica papaya HOM05D004726 ORTHO05D005986 2.5e-162 575.5 311 83.9
Lsat_1_v5_gn_2_93500 Lactuca sativa HOM05D004726 ORTHO05D005986 2.5e-162 575.5 304 85.9
Ciclev10014283m.g Citrus clementina HOM05D004726 ORTHO05D005986 3.3e-162 575.1 307 85.3
Gohir.A09G032200 Gossypium hirsutum HOM05D004726 ORTHO05D005986 3.3e-162 575.1 305 83.9
arahy.Tifrunner.gnm1.ann1.2353RE Arachis hypogaea HOM05D004726 ORTHO05D005986 9.7e-162 573.5 302 84.1
CSS0026983 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 9.7e-162 573.5 309 84.1
CSS0005841 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 1.3e-161 573.2 309 84.1
CsaV3_3G027570 Cucumis sativus L. HOM05D004726 ORTHO05D005986 2.2e-161 572.4 305 84.6
Duzib187G0212 Durio zibethinus HOM05D004726 ORTHO05D005986 2.8e-161 572.0 305 84.3
Lju41A46T85 Lonicera japonica HOM05D004726 ORTHO05D005986 4.8e-161 571.2 303 87.1
Nn4g22464 Nelumbo nucifera HOM05D004726 ORTHO05D005986 4.8e-161 571.2 282 89.7
Lj2g0016129 Lotus japonicus HOM05D004726 ORTHO05D005986 8.2e-161 570.5 309 82.2
MELO3C014786.2 Cucumis melo HOM05D004726 ORTHO05D005986 1.1e-160 570.1 307 83.7
VMungo0464G1053 Vigna mungo HOM05D004726 ORTHO05D005986 2.4e-160 568.9 310 81.9
Lalb_Chr21g0317631 Lupinus albus HOM05D004726 ORTHO05D005986 3.1e-160 568.5 304 82.2
SHI03847 Sapria himalayana HOM05D004726 ORTHO05D005986 5.3e-160 567.8 309 83.2
Migut.G00516 Erythranthe guttata HOM05D004726 ORTHO05D005986 9.1e-160 567.0 309 84.5
SalBow2G0243 Salvia bowleyana HOM05D004726 ORTHO05D005986 1.2e-159 566.6 301 84.4
Thecc.04G026000 Theobroma cacao HOM05D004726 ORTHO05D005986 1.2e-159 566.6 305 83.3
Thhalv10020079m.g Eutrema salsugineum HOM05D004726 ORTHO05D005986 1.5e-159 566.2 301 82.4
Cc07_g00350 Coffea canephora HOM05D004726 ORTHO05D005986 2.6e-159 565.5 286 88.8
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 3.4e-159 565.1 277 91.7
Phvul.004G058000 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 4.5e-159 564.7 310 82.3
Sed0019499 Sechium edule HOM05D004726 ORTHO05D005986 5.9e-159 564.3 312 82.1
Solyc05g008260.3 Solanum lycopersicum HOM05D004726 ORTHO05D005986 5.9e-159 564.3 306 82.4
Glyma.05G072300 Glycine max HOM05D004726 ORTHO05D005986 7.7e-159 563.9 309 81.6
Sopen05g004100 Solanum pennellii HOM05D004726 ORTHO05D005986 7.7e-159 563.9 306 82.4
Peaxi162Scf00205g00121 Petunia axillaris HOM05D004726 ORTHO05D005986 1.0e-158 563.5 306 83.0
Sed0012188 Sechium edule HOM05D004726 ORTHO05D005986 1.3e-158 563.1 307 82.4
CANSAT64G1163 Cannabis sativa HOM05D004726 ORTHO05D005986 1.7e-158 562.8 308 82.5
THA.LOC104821108 Tarenaya hassleriana HOM05D004726 ORTHO05D005986 1.7e-158 562.8 292 84.9
Aa31LG5G10860 Aethionema arabicum HOM05D004726 ORTHO05D005986 2.2e-158 562.4 304 81.2
Eucgr.J02276 Eucalyptus grandis HOM05D004726 ORTHO05D005986 2.2e-158 562.4 309 82.8
PGSC0003DMG400030549 Solanum tuberosum HOM05D004726 ORTHO05D005986 2.2e-158 562.4 306 82.0
Oeu048592.1 Olea europaea HOM05D004726 ORTHO05D005986 2.9e-158 562.0 303 82.8
Aqoxy5G03586 Aquilegia oxysepala HOM05D004726 ORTHO05D005986 5.0e-158 561.2 305 83.3
DCAR_002964 Daucus carota HOM05D004726 ORTHO05D005986 6.5e-158 560.8 301 85.0
Sp3g00330 Schrenkiella parvula HOM05D004726 ORTHO05D005986 6.5e-158 560.8 309 80.3
SGA_v2.0_scaffold135G34934 Striga asiatica HOM05D004726 ORTHO05D005986 6.5e-158 560.8 311 82.0
MD17G1018800 Malus domestica HOM05D004726 ORTHO05D005986 8.5e-158 560.5 309 83.5
MD09G1018400 Malus domestica HOM05D004726 ORTHO05D005986 1.1e-157 560.1 309 82.8
RcHm_v2.0_Chr2g0174041 Rosa chinensis HOM05D004726 ORTHO05D005986 1.1e-157 560.1 303 82.8
FAN05G3820 Fragaria x ananassa HOM05D004726 ORTHO05D005986 1.9e-157 559.3 302 83.1
PSO017G0372 Papaver somniferum HOM05D004726 ORTHO05D005986 1.9e-157 559.3 280 87.9
PSO478G3762 Papaver somniferum HOM05D004726 ORTHO05D005986 1.9e-157 559.3 280 87.9
PGR083G2241 Punica granatum HOM05D004726 ORTHO05D005986 4.2e-157 558.1 309 82.8
Medtr6g022320 Medicago truncatula HOM05D004726 ORTHO05D005986 5.5e-157 557.8 290 83.1
Oeu033801.1 Olea europaea HOM05D004726 ORTHO05D005986 9.4e-157 557.0 310 81.3
FAN02G2743 Fragaria x ananassa HOM05D004726 ORTHO05D005986 1.6e-156 556.2 302 83.1
PSO017G1160 Papaver somniferum HOM05D004726 ORTHO05D005986 1.6e-156 556.2 280 87.1
BcaC01g04537 Brassica carinata HOM05D004726 ORTHO05D005986 2.1e-156 555.8 304 79.6
FvH4_6g52410 Fragaria vesca HOM05D004726 ORTHO05D005986 2.1e-156 555.8 302 83.1
AL3G10420 Arabidopsis lyrata HOM05D004726 ORTHO05D005986 3.6e-156 555.1 304 80.6
A03p32390 Brassica napus HOM05D004726 ORTHO05D005986 3.6e-156 555.1 303 79.9
BraA03t12409Z Brassica rapa HOM05D004726 ORTHO05D005986 3.6e-156 555.1 303 79.9
Ca_04399_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 3.6e-156 555.1 311 77.8
C03p39450 Brassica napus HOM05D004726 ORTHO05D005986 6.1e-156 554.3 304 79.3
BolC3t16213H Brassica oleracea HOM05D004726 ORTHO05D005986 6.1e-156 554.3 304 79.3
FAN14G5799 Fragaria x ananassa HOM05D004726 ORTHO05D005986 7.9e-156 553.9 302 82.8
Nitab4.5_0004776g0030 Nicotiana tabacum HOM05D004726 ORTHO05D005986 1.0e-155 553.5 312 79.8
TPR.G7511 Trifolium pratense HOM05D004726 ORTHO05D005986 1.0e-155 553.5 312 78.8
Lj1g0014024 Lotus japonicus HOM05D004726 ORTHO05D005986 1.4e-155 553.1 282 86.5
AT3G01720 Arabidopsis thaliana HOM05D004726 ORTHO05D005986 1.1e-154 550.1 304 79.6
Psat1g083400 Pisum sativum HOM05D004726 ORTHO05D005986 1.5e-154 549.7 302 80.1
Sc07g0004390 Simmondsia chinensis HOM05D004726 ORTHO05D005986 2.0e-154 549.3 303 80.5
Carub.0003s0033 Capsella rubella HOM05D004726 ORTHO05D005986 4.4e-154 548.1 304 79.6
Glyma.16G063900 Glycine max HOM05D004726 ORTHO05D005986 2.8e-153 545.4 306 81.0
Lalb_Chr22g0360561 Lupinus albus HOM05D004726 ORTHO05D005986 3.7e-153 545.0 304 79.9
Phvul.008G146800 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 2.4e-152 542.3 307 79.8
Ca_03877_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 3.1e-152 542.0 286 83.6
HPP92_015461 Vanilla planifolia HOM05D004726 ORTHO05D005986 4.1e-152 541.6 282 84.4
AUR62018238 Chenopodium quinoa HOM05D004726 ORTHO05D005986 1.5e-151 539.7 304 77.0
Ah.11g044820 Amaranthus hybridus HOM05D004726 ORTHO05D005986 2.6e-151 538.9 306 77.5
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 1.7e-150 536.2 307 80.8
Medtr0044s0180 Medicago truncatula HOM05D004726 ORTHO05D005986 2.2e-150 535.8 301 80.1
PSO386G0103 Papaver somniferum HOM05D004726 ORTHO05D005986 1.9e-149 532.7 281 81.9
Psat0s1369g0120 Pisum sativum HOM05D004726 ORTHO05D005986 1.9e-149 532.7 309 79.6
AUR62037765 Chenopodium quinoa HOM05D004726 ORTHO05D005986 5.5e-149 531.2 304 76.6
TPR.G9063 Trifolium pratense HOM05D004726 ORTHO05D005986 3.6e-148 528.5 309 79.0
EL10Ac2g03214 Beta vulgaris HOM05D004726 ORTHO05D005986 8.8e-147 523.9 277 81.2
VMungo1383G2700 Vigna mungo HOM05D004726 ORTHO05D005986 1.5e-146 523.1 288 79.9
Os01g0904500 Oryza sativa ssp. japonica HOM05D004726 ORTHO05D005986 8.5e-142 507.3 309 72.5
Hund13042 Selenicereus undatus HOM05D004726 ORTHO05D005986 1.1e-141 506.9 361 65.7
Pp3c10_20040 Physcomitrium patens HOM05D004726 ORTHO05D005986 1.3e-137 493.4 291 73.2
Ah.12g055330 Amaranthus hybridus HOM05D004726 ORTHO05D005986 1.7e-137 493.0 256 84.4
SMO117G0207 Selaginella moellendorffii HOM05D004726 ORTHO05D005986 6.3e-137 491.1 300 73.7
AagrBONN_evm.TU.Sc2ySwM_344.876 Anthoceros agrestis HOM05D004726 ORTHO05D005986 1.8e-136 489.6 284 74.6
Rhsim05G0094900 Rhododendron simsii HOM05D004726 ORTHO05D005986 3.1e-136 488.8 306 75.2
Mapoly0014s0026 Marchantia polymorpha HOM05D004726 ORTHO05D005986 5.5e-133 478.0 319 67.1
Oeu050441.1 Olea europaea HOM05D004726 ORTHO05D005986 1.0e-131 473.8 311 72.7
Haze_14803 Corylus avellana HOM05D004726 ORTHO05D005986 1.7e-121 439.9 311 68.2
Glyma.19G055500 Glycine max HOM05D004726 ORTHO05D005986 7.0e-120 434.5 231 83.1
vmacro05911 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 2.3e-118 429.5 207 90.3
vmacro05915 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 2.3e-118 429.5 207 90.3
CARHR075200 Cardamine hirsuta HOM05D004726 ORTHO05D005986 6.6e-118 427.9 308 63.6
Duzib147G0777 Durio zibethinus HOM05D004726 ORTHO05D005986 1.5e-117 426.8 303 68.0
Atru.BG.103.p Acer truncatum HOM05D004726 ORTHO05D005986 2.1e-108 396.4 282 63.8
Atru.chr3.2443 Acer truncatum HOM05D004726 ORTHO05D005986 2.1e-108 396.4 282 63.8
Pp3c3_33250 Physcomitrium patens HOM05D004726 ORTHO05D005986 2.3e-107 392.9 272 64.7
TAR374G1052 Trochodendron aralioides HOM05D004726 ORTHO05D005986 3.4e-106 389.0 275 64.0
Oeu054664.1 Olea europaea HOM05D004726 ORTHO05D005986 2.9e-105 386.0 285 60.4
TAR622G0871 Trochodendron aralioides HOM05D004726 ORTHO05D005986 4.3e-85 318.9 275 56.0
MD04G1153000 Malus domestica HOM05D004726 ORTHO05D005986 2.4e-80 303.1 171 79.5
VMungo1383G3734 Vigna mungo HOM05D004726 ORTHO05D005986 6.9e-75 285.0 203 62.6
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 1.2e-71 274.2 148 78.4
PRCOL_00002880 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 3.3e-61 239.6 298 40.9
Zm00001eb128230 Zea mays HOM05D004726 ORTHO05D005986 2.1e-60 236.9 121 82.6
Zm00001eb144300 Zea mays HOM05D004726 ORTHO05D005986 1.1e-59 234.6 150 67.3
Zm00001eb389090 Zea mays HOM05D004726 ORTHO05D005986 1.8e-59 233.8 121 81.0
Psat5g191640 Pisum sativum HOM05D004726 ORTHO05D005986 6.9e-59 231.9 169 61.5
Zm00001eb344270 Zea mays HOM05D004726 ORTHO05D005986 1.5e-58 230.7 121 81.0
CBR_g52139 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-54 217.6 149 59.1
Cre12.g520450 Chlamydomonas reinhardtii HOM05D004726 ORTHO05D005986 1.8e-54 217.2 330 37.9
PRCOL_00003197 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 8.7e-54 214.9 303 38.6
unitig_37.g12422 Utricularia gibba HOM05D004726 ORTHO05D005986 8.7e-54 214.9 211 46.0
Zm00001eb311070 Zea mays HOM05D004726 ORTHO05D005986 1.5e-53 214.2 108 83.3
Zm00001eb128240 Zea mays HOM05D004726 ORTHO05D005986 4.6e-47 192.6 123 65.9
MCO03G447 Micromonas commoda HOM05D004726 ORTHO05D005986 8.8e-46 188.3 284 39.1
Gohir.D07G232450 Gossypium hirsutum HOM05D004726 ORTHO05D005986 5.0e-41 172.6 121 66.9
Gorai.001G267700 Gossypium raimondii HOM05D004726 ORTHO05D005986 9.4e-40 168.3 121 65.3
CAN.G1334.7 Capsicum annuum HOM05D004726 ORTHO05D005986 5.9e-34 149.1 76 82.9
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 1.3e-33 147.9 79 81.0
RcHm_v2.0_Chr2g0174051 Rosa chinensis HOM05D004726 ORTHO05D005986 5.5e-32 142.5 151 49.0
TAR622G0354 Trochodendron aralioides HOM05D004726 ORTHO05D005986 3.6e-31 139.8 68 94.1
Psat2g089280 Pisum sativum HOM05D004726 ORTHO05D005986 2.9e-25 120.2 101 58.4
Psat1g035560 Pisum sativum HOM05D000639 ORTHO05D003485 5.0e-25 119.4 83 65.1
MD04G1152900 Malus domestica HOM05D004726 ORTHO05D005986 5.0e-17 92.8 79 62.0
HanXRQChr17g0562941 Helianthus annuus HOM05D004726 ORTHO05D005986 2.5e-16 90.5 60 65.0
HanXRQChr13g0417601 Helianthus annuus HOM05D004726 ORTHO05D005986 3.6e-15 86.7 51 70.6
vmacro17548 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 4.1e-11 73.2 60 58.3
PRCOL_00001236 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 2.7e-10 70.5 300 24.0
Phvul.006G014000 Phaseolus vulgaris HOM05D001570 ORTHO05D001566 2.3e-09 67.4 271 21.8
Pp3c14_17200 Physcomitrium patens HOM05D001570 ORTHO05D001566 2.9e-09 67.0 262 25.6
THA.LOC104816926 Tarenaya hassleriana HOM05D001570 ORTHO05D001566 3.8e-09 66.6 273 22.7
CAN.G1285.3 Capsicum annuum HOM05D004726 ORTHO05D005986 5.0e-09 66.2 61 54.1
VMungo0540G2325 Vigna mungo HOM05D001570 ORTHO05D001566 5.0e-09 66.2 310 22.6
PRCOL_00000161 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 6.6e-09 65.9 295 24.7
HanXRQChr15g0481461 Helianthus annuus HOM05D001570 ORTHO05D001566 8.6e-09 65.5 309 21.0
MD08G1068600 Malus domestica HOM05D004726 ORTHO05D005986 8.0e-07 58.9 45 64.4


User provided reference genes

Program Settings