Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 0.0e+00 1231.9 624 100.0
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 3.6e-277 958.0 621 78.4
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 5.3e-244 847.8 626 70.0
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 3.2e-241 838.6 638 68.2
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 6.6e-239 830.9 637 68.1
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.1e-238 830.1 631 67.8
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 9.6e-238 827.0 629 68.8
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 2.0e-235 819.3 639 66.2
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 2.0e-235 819.3 644 66.3
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 3.4e-235 818.5 629 67.7
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.2e-234 815.8 633 67.9
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 6.4e-234 814.3 641 66.9
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 1.1e-233 813.5 629 68.2
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 3.2e-233 812.0 634 65.5
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 4.6e-232 808.1 634 65.1
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 2.5e-230 802.4 637 65.8
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 2.5e-230 802.4 617 67.1
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.3e-229 800.0 633 66.8
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 2.8e-229 798.9 618 67.6
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 1.4e-228 796.6 621 67.1
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 9.0e-228 793.9 632 66.8
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.1e-225 786.9 618 67.8
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.5e-225 785.8 635 64.9
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 6.0e-224 781.2 635 65.8
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 5.1e-223 778.1 638 64.1
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 2.1e-221 772.7 642 64.0
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 3.7e-221 771.9 632 63.6
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.7e-218 763.1 650 61.2
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 2.2e-218 762.7 627 62.2
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 2.5e-217 759.2 623 63.6
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 4.2e-217 758.4 631 63.7
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 5.5e-217 758.1 634 63.2
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 1.2e-216 756.9 633 62.1
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 1.6e-216 756.5 629 61.8
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.6e-216 756.5 628 63.2
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.7e-216 755.7 629 62.8
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 1.8e-215 753.1 619 64.1
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 3.0e-215 752.3 627 63.0
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 3.0e-215 752.3 641 62.6
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 3.9e-215 751.9 623 64.4
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.5e-214 750.0 640 62.3
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 2.5e-214 749.2 643 60.7
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 4.3e-214 748.4 618 63.9
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 9.7e-214 747.3 628 63.4
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 9.7e-214 747.3 632 63.0
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 2.2e-213 746.1 639 62.8
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 2.2e-213 746.1 641 61.8
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.4e-212 743.4 632 61.6
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.8e-212 743.0 613 63.0
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 5.3e-212 741.5 633 61.9
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 9.0e-212 740.7 639 60.9
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 1.2e-211 740.3 633 62.2
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 3.4e-211 738.8 626 61.7
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 4.5e-211 738.4 631 61.0
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.7e-210 736.5 632 60.4
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 2.9e-210 735.7 634 61.0
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.5e-209 732.6 632 61.9
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 2.5e-209 732.6 631 62.8
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 4.2e-209 731.9 637 60.6
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 7.2e-209 731.1 633 60.2
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 7.2e-209 731.1 633 60.2
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 7.2e-209 731.1 623 60.8
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.6e-208 729.9 632 61.6
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 2.7e-208 729.2 631 61.8
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 3.6e-208 728.8 633 61.8
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.0e-207 727.2 629 60.4
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.8e-205 719.2 658 58.4
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.8e-205 719.2 674 58.0
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 4.8e-205 718.4 636 60.2
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.8e-204 716.5 633 60.3
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.8e-204 716.5 639 58.8
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 9.1e-204 714.1 626 60.5
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 1.5e-203 713.4 628 59.1
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.6e-200 703.4 638 59.2
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.7e-200 702.6 599 62.4
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 2.3e-199 699.5 640 58.3
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.5e-198 696.8 635 59.7
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 2.0e-195 686.4 633 58.5
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 3.8e-194 682.2 613 58.6
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 3.2e-193 679.1 472 70.3
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.4e-188 663.7 526 63.9
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-187 660.2 577 60.3
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 7.7e-187 657.9 560 62.1
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 1.9e-185 653.3 643 55.8
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 2.1e-184 649.8 522 64.0
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 5.2e-183 645.2 657 53.7
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.0e-178 630.9 630 56.2
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 3.8e-178 629.0 482 66.2
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 3.7e-173 612.5 673 51.1
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 8.6e-170 601.3 531 61.8
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 5.2e-167 592.0 503 60.6
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.4e-164 583.2 487 66.3
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.7e-162 577.0 644 50.0
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 8.6e-162 574.7 690 47.7
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 6.1e-160 568.5 640 49.2
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 9.8e-150 534.6 588 51.2
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.5e-145 520.0 535 52.5
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 3.8e-133 479.6 437 61.6
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.4e-132 476.9 633 43.4
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 1.2e-123 448.0 509 51.1
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 4.5e-118 429.5 747 36.3
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 2.7e-115 420.2 643 40.9
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 8.4e-109 398.7 382 59.9
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 3.9e-106 389.8 271 69.7
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.6e-96 357.8 559 39.4
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 3.1e-95 353.6 284 66.5
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.7e-93 347.8 329 58.4
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 7.2e-92 342.4 644 37.1
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 1.0e-90 338.6 325 56.6
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 1.9e-84 317.8 284 62.0
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 1.1e-79 302.0 489 39.5
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 9.1e-79 298.9 406 48.3
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 4.4e-73 280.0 283 55.8
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 5.7e-73 279.6 332 48.5
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 4.2e-68 263.5 206 69.4
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 6.3e-64 249.6 170 73.5
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 1.1e-60 238.8 354 44.1
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.3e-56 225.3 382 41.6
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 1.7e-56 224.9 201 57.2
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.1e-52 212.2 149 67.8
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.9e-52 211.5 158 67.7
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 6.0e-38 163.3 116 64.7
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 3.3e-36 157.5 237 38.4
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 1.2e-30 139.0 668 26.8
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 1.8e-26 125.2 171 43.9
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 7.8e-14 83.2 156 36.5
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 2.3e-13 81.6 158 37.3
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 6.6e-13 80.1 64 64.1
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.3e-11 75.9 55 65.5
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.8e-11 74.7 120 40.0
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 8.1e-11 73.2 64 59.4
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 1.8e-10 72.0 99 46.5
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.0e-09 68.6 86 40.7
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.7e-08 65.5 55 56.4
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 4.9e-08 63.9 99 40.4
GSVIVG01036155001 Vitis vinifera HOM05D005709 ORTHO05D006306 4.9e-08 63.9 55 52.7


User provided reference genes

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