Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 6.2e-269 930.2 484 100.0
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 3.4e-267 924.5 484 99.4
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 7.8e-94 348.6 333 61.6
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 5.8e-89 332.4 490 43.5
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 1.4e-87 327.8 499 45.1
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 7.0e-87 325.5 537 44.5
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 9.5e-84 315.1 504 44.8
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 6.2e-83 312.4 540 43.5
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 1.1e-82 311.6 510 43.9
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.2e-81 308.1 505 43.8
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 2.9e-80 303.5 493 45.2
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.9e-79 300.8 514 44.2
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 7.0e-79 298.9 516 43.8
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 1.6e-78 297.7 556 40.8
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.5e-76 291.2 494 43.5
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.9e-76 290.8 515 42.5
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 9.5e-76 288.5 494 43.3
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 9.5e-76 288.5 295 57.3
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 3.6e-75 286.6 325 54.5
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 4.7e-75 286.2 446 44.8
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 6.2e-75 285.8 313 53.7
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.1e-74 285.0 328 54.3
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.3e-74 283.9 312 53.5
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 2.3e-74 283.9 518 42.5
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 5.2e-74 282.7 561 39.9
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 4.4e-73 279.6 297 55.9
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 9.9e-73 278.5 421 44.9
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 1.3e-72 278.1 520 41.2
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 1.3e-72 278.1 512 42.8
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.9e-71 274.2 392 44.4
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 3.5e-70 270.0 484 38.0
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.3e-69 267.3 487 42.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.3e-69 267.3 327 52.0
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 1.2e-67 261.5 465 42.2
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.2e-67 261.5 508 41.5
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 1.2e-67 261.5 442 43.4
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 3.6e-67 260.0 442 43.4
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 8.1e-67 258.8 447 42.7
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 4.0e-66 256.5 499 41.3
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 1.2e-65 255.0 520 39.2
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 1.2e-65 255.0 292 51.7
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.0e-65 254.2 491 41.3
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 9.9e-65 251.9 312 50.3
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 3.8e-64 250.0 312 49.7
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 4.9e-64 249.6 406 43.1
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.9e-63 247.7 492 39.4
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 2.4e-63 247.3 491 39.1
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 2.4e-63 247.3 491 39.1
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 2.7e-62 243.8 497 39.6
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 6.0e-62 242.7 493 39.6
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.3e-61 241.5 493 40.0
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 1.3e-61 241.5 424 42.5
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 3.0e-61 240.4 539 37.1
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 3.0e-61 240.4 437 39.1
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 5.1e-61 239.6 480 40.4
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 5.1e-61 239.6 409 40.6
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 8.7e-61 238.8 470 37.0
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 5.6e-60 236.1 296 51.4
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 9.6e-60 235.3 398 43.0
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 1.2e-59 235.0 322 45.7
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.1e-59 234.2 388 43.0
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 3.6e-59 233.4 496 39.3
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 4.7e-59 233.0 395 41.3
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 4.7e-59 233.0 422 39.8
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 1.4e-58 231.5 499 38.3
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.4e-58 231.5 293 48.1
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.8e-58 231.1 505 39.2
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.8e-58 231.1 386 42.2
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 2.4e-58 230.7 494 38.3
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 6.9e-58 229.2 497 37.4
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 9.0e-58 228.8 287 48.8
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 9.0e-58 228.8 296 46.6
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 1.2e-57 228.4 324 46.6
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 2.0e-57 227.6 319 45.8
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 2.6e-57 227.3 342 43.9
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.4e-57 226.9 474 36.7
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 5.8e-57 226.1 499 39.5
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 1.3e-56 224.9 327 47.7
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.3e-56 224.9 306 47.7
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.3e-56 224.9 463 41.0
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 4.9e-56 223.0 383 42.3
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.9e-55 221.1 480 38.3
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 3.2e-55 220.3 309 45.3
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 4.2e-55 219.9 445 40.7
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 7.1e-55 219.2 299 48.5
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 9.3e-55 218.8 474 40.5
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 1.6e-54 218.0 471 37.8
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 4.6e-54 216.5 427 39.1
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.5e-52 211.5 497 36.0
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 4.3e-52 209.9 389 43.2
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 9.6e-52 208.8 488 37.3
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 9.6e-52 208.8 481 36.8
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.3e-51 208.4 275 49.5
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 4.8e-51 206.5 473 37.2
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 8.1e-51 205.7 493 36.7
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 8.1e-51 205.7 387 39.8
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 1.8e-50 204.5 290 46.2
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 6.9e-50 202.6 300 44.7
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 1.2e-49 201.8 329 41.6
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 4.9e-48 196.4 489 36.2
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 6.4e-48 196.1 482 35.7
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 2.1e-46 191.0 524 34.2
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 1.8e-45 188.0 527 34.0
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 2.3e-45 187.6 528 34.3
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 2.3e-45 187.6 528 34.3
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 4.3e-44 183.3 259 47.5
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 7.4e-44 182.6 534 34.5
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 2.4e-42 177.6 369 37.9
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 3.1e-42 177.2 486 33.5
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 1.4e-39 168.3 268 41.8
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 9.6e-36 155.6 235 44.7
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 1.3e-35 155.2 291 37.8
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 1.6e-35 154.8 489 31.1
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 2.8e-35 154.1 254 41.3
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.7e-35 153.7 200 48.5
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 1.4e-34 151.8 270 38.1
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 8.4e-32 142.5 391 33.0
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.9e-28 131.3 248 39.1
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 1.6e-27 128.3 294 33.7
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 2.0e-25 121.3 257 37.7
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 6.5e-24 116.3 503 31.2
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.0e-21 109.0 241 36.5
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 1.4e-21 108.6 271 32.5
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.5e-17 95.1 268 30.6
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 2.7e-14 84.3 269 26.0
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 3.6e-14 84.0 243 30.0
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 3.5e-09 67.4 174 34.5
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 5.9e-09 66.6 80 43.8
TAR625G0743 Trochodendron aralioides HOM05D005322 ORTHO05D006746 6.5e-08 63.2 82 45.1
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.1e-07 62.4 154 34.4
Actinidia36381 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.7e-06 57.8 79 45.6
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 4.7e-06 57.0 63 49.2


User provided reference genes

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