Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 3.9e-128 461.5 232 100.0
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 3.9e-128 461.5 232 100.0
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 3.6e-89 332.0 232 70.7
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 4.7e-81 305.1 228 67.1
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 3.4e-79 298.9 231 63.6
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 4.9e-78 295.0 229 64.6
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 1.3e-75 287.0 233 60.9
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.1e-74 283.9 229 65.1
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 1.1e-74 283.9 229 64.6
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.2e-73 278.1 233 61.4
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 1.1e-72 277.3 230 62.6
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 3.1e-72 275.8 232 60.8
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 4.0e-72 275.4 233 63.1
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 6.8e-72 274.6 236 60.2
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 2.2e-70 269.6 231 60.2
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 8.3e-70 267.7 231 61.0
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 8.3e-70 267.7 222 62.2
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 5.4e-69 265.0 232 62.1
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 7.1e-69 264.6 231 60.6
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 3.9e-67 258.8 232 59.1
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 5.1e-67 258.5 226 56.6
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 2.5e-66 256.1 231 55.0
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 3.6e-65 252.3 233 59.2
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 3.6e-65 252.3 191 68.6
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 3.1e-64 249.2 233 54.9
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.6e-63 246.1 223 56.1
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 5.8e-63 245.0 229 54.1
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 4.9e-62 241.9 242 52.5
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 4.9e-62 241.9 232 53.9
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.7e-59 233.4 230 53.0
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.7e-59 233.4 234 52.6
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 1.7e-59 233.4 232 52.2
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 6.6e-59 231.5 222 53.6
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 8.7e-59 231.1 222 54.5
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 1.1e-58 230.7 232 50.9
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 9.6e-58 227.6 230 53.5
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.2e-57 227.3 227 51.5
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 1.6e-57 226.9 223 51.1
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 1.6e-57 226.9 232 49.6
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 3.6e-57 225.7 222 54.1
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.8e-56 223.4 222 53.2
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.4e-56 223.0 232 48.7
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 4.0e-56 222.2 224 50.9
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 4.0e-56 222.2 237 48.1
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 5.2e-56 221.9 229 51.5
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 5.2e-56 221.9 229 51.5
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 6.9e-56 221.5 222 52.3
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 9.0e-56 221.1 233 48.9
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.5e-55 220.3 232 48.7
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 2.6e-55 219.5 229 50.2
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 2.6e-55 219.5 224 51.3
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 3.4e-55 219.2 228 47.4
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 9.9e-55 217.6 230 48.3
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 9.9e-55 217.6 235 48.5
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 1.3e-54 217.2 229 50.2
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 1.3e-54 217.2 229 50.2
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 2.2e-54 216.5 224 50.9
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 4.9e-54 215.3 230 48.7
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 6.4e-54 214.9 230 50.0
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 8.4e-54 214.5 221 51.1
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.4e-53 213.8 240 48.3
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 5.4e-53 211.8 233 47.2
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 5.4e-53 211.8 231 45.9
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 5.4e-53 211.8 228 46.5
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 9.3e-53 211.1 231 45.0
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.1e-52 209.9 233 49.4
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 2.7e-52 209.5 222 50.0
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 6.0e-52 208.4 227 48.5
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 2.3e-51 206.5 222 48.6
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 3.9e-51 205.7 249 45.8
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.5e-50 203.8 252 44.4
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 2.5e-50 203.0 216 50.9
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 2.5e-50 203.0 240 45.8
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 1.3e-49 200.7 242 46.3
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 1.1e-48 197.6 222 48.2
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 1.8e-48 196.8 222 47.7
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.1e-48 196.1 230 44.3
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 1.2e-47 194.1 222 47.3
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.5e-47 193.7 253 45.5
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 2.6e-47 193.0 221 47.1
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 7.6e-47 191.4 216 47.7
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 9.9e-47 191.0 221 46.6
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 1.3e-46 190.7 207 48.8
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 4.9e-46 188.7 210 48.1
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 6.4e-46 188.3 262 42.4
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 8.4e-46 188.0 205 48.8
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 8.4e-46 188.0 230 43.0
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 4.2e-45 185.7 228 43.9
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 5.4e-45 185.3 237 42.2
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.2e-44 184.1 254 46.1
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 2.1e-44 183.3 244 42.6
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.7e-44 183.0 232 44.0
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.6e-44 182.2 209 45.5
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 7.9e-44 181.4 229 45.0
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 3.9e-43 179.1 202 51.5
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.1e-42 177.6 222 45.5
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 2.5e-42 176.4 215 47.0
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 2.5e-42 176.4 223 45.7
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 4.3e-42 175.6 285 39.6
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 4.3e-42 175.6 215 45.6
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 5.6e-42 175.3 208 46.6
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.6e-41 173.7 229 39.3
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 8.1e-41 171.4 181 49.7
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 8.1e-41 171.4 227 41.9
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.4e-40 170.6 220 45.9
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.4e-40 170.6 227 41.4
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 3.4e-39 166.0 237 41.4
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.3e-38 164.1 220 45.0
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 2.2e-38 163.3 216 42.6
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 3.8e-38 162.5 218 41.3
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 8.4e-38 161.4 226 38.1
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.1e-37 161.0 224 40.6
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 2.4e-37 159.8 225 39.6
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 7.1e-37 158.3 151 59.6
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 9.3e-37 157.9 241 35.7
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.2e-36 157.5 173 47.4
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 1.3e-35 154.1 229 37.1
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.3e-35 154.1 117 65.0
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 1.3e-35 154.1 221 37.1
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.3e-33 147.5 130 57.7
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 5.3e-32 142.1 222 37.8
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.5e-28 129.4 227 37.0
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 8.7e-27 124.8 214 32.2
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 8.7e-27 124.8 186 36.0
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 4.1e-24 115.9 75 69.3
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 5.3e-24 115.5 221 31.2
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 5.0e-22 109.0 72 62.5
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 5.0e-22 109.0 138 47.1
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 8.5e-22 108.2 95 55.8
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 4.2e-21 105.9 124 48.4
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 5.5e-21 105.5 126 46.8
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 7.2e-21 105.1 95 50.5
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 2.1e-20 103.6 179 38.5
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 2.7e-20 103.2 180 35.0
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 5.1e-19 99.0 58 75.9
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 5.1e-19 99.0 58 75.9
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 9.7e-18 94.7 110 42.7
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 6.3e-17 92.0 110 42.7
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 1.5e-15 87.4 66 57.6
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 3.4e-15 86.3 94 50.0
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.2e-12 77.8 229 26.6
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 1.2e-12 77.8 103 41.7
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 5.1e-11 72.4 219 26.0
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 3.3e-10 69.7 131 32.8
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 5.7e-10 68.9 220 25.5
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.3e-09 67.8 63 39.7
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 2.8e-09 66.6 65 52.3


User provided reference genes

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