Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.1e-214 750.0 446 100.0
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.1e-214 750.0 446 100.0
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.4e-113 414.1 475 59.6
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 2.9e-103 379.8 462 56.5
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 4.9e-103 379.0 434 54.8
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.4e-102 377.5 432 55.3
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 3.5e-101 372.9 427 57.6
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.9e-94 350.5 470 50.6
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 7.1e-94 348.6 457 55.6
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.0e-92 344.7 450 56.4
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.3e-92 343.6 415 57.8
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.3e-92 343.6 416 56.7
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.4e-86 324.3 436 47.9
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.2e-85 321.2 472 50.0
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.6e-85 319.7 460 49.3
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 3.9e-84 316.2 438 49.8
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 6.7e-84 315.5 410 53.2
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 2.2e-82 310.5 381 50.9
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.8e-82 309.3 413 52.1
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 6.3e-82 308.9 462 54.3
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 6.3e-82 308.9 395 53.7
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 6.9e-81 305.4 470 47.9
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 2.2e-79 300.4 433 48.3
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 3.8e-79 299.7 442 50.2
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.5e-78 297.0 444 52.7
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 4.2e-78 296.2 393 50.1
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 3.6e-77 293.1 429 50.1
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.4e-76 291.2 492 44.7
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 5.1e-76 289.3 439 46.9
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 7.0e-73 278.9 414 47.6
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 9.1e-73 278.5 440 47.7
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 1.5e-72 277.7 471 45.6
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 7.7e-72 275.4 415 46.5
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 4.2e-70 269.6 412 46.6
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 4.2e-70 269.6 412 46.6
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.1e-69 267.3 495 44.0
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 2.7e-69 266.9 409 45.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.5e-67 261.2 551 42.6
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 2.6e-67 260.4 377 44.0
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.4e-67 259.6 493 42.8
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.7e-67 259.2 491 43.6
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 5.7e-67 259.2 387 45.5
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 7.4e-67 258.8 468 44.4
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.3e-66 255.8 553 42.7
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 5.3e-65 252.7 495 43.0
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 5.0e-63 246.1 401 46.4
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 8.5e-63 245.4 489 44.4
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.5e-62 244.6 404 45.5
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 3.2e-62 243.4 470 39.6
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.2e-62 243.0 486 40.7
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.6e-61 241.1 359 52.4
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.7e-61 240.4 417 46.8
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 4.7e-61 239.6 433 42.7
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 8.0e-61 238.8 500 37.4
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 8.0e-61 238.8 453 43.5
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.0e-60 238.4 499 37.5
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.8e-60 237.7 376 43.1
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.8e-60 237.7 477 40.9
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.3e-60 237.3 372 48.4
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 5.2e-60 236.1 432 43.8
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 6.8e-60 235.7 535 39.1
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 8.8e-60 235.3 463 40.2
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.4e-59 233.0 431 43.2
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.5e-59 232.3 438 40.0
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 9.8e-59 231.9 333 52.0
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 9.8e-59 231.9 476 39.1
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.7e-58 231.1 373 44.2
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 8.3e-58 228.8 408 40.4
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.4e-57 227.3 458 45.6
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 3.1e-57 226.9 460 42.2
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 9.1e-57 225.3 453 40.8
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 9.1e-57 225.3 526 35.7
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.6e-56 224.6 512 41.2
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.3e-55 221.5 450 41.8
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 5.0e-55 219.5 391 41.7
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 5.0e-55 219.5 391 41.7
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 8.5e-55 218.8 375 45.3
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.5e-54 218.0 473 39.5
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 2.7e-53 213.8 375 44.5
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.6e-53 213.4 512 41.4
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 8.0e-53 212.2 458 45.2
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.4e-52 211.5 557 35.0
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.4e-52 211.5 452 44.2
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.0e-52 210.3 441 40.1
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 5.2e-52 209.5 453 36.4
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 8.8e-52 208.8 433 41.8
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 2.6e-51 207.2 418 40.2
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 3.4e-51 206.8 397 42.3
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 3.4e-51 206.8 499 36.3
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.7e-50 203.4 539 39.1
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.1e-49 201.8 447 36.0
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 4.1e-49 199.9 508 38.2
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.9e-47 193.7 515 39.0
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 2.5e-46 190.7 431 40.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.5e-46 188.7 396 42.7
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 3.6e-45 186.8 518 36.1
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 8.0e-45 185.7 548 35.8
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.0e-44 185.3 556 35.8
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 2.3e-44 184.1 514 36.8
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 3.0e-44 183.7 518 37.6
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.2e-43 181.8 423 41.6
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 2.0e-43 181.0 437 36.2
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.5e-43 179.1 454 38.5
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.8e-41 174.5 425 36.0
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 9.2e-41 172.2 525 36.2
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.6e-40 171.4 510 34.9
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.5e-40 170.2 504 35.1
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 5.0e-39 166.4 425 34.4
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.6e-39 166.0 413 35.4
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 6.6e-39 166.0 456 35.5
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 8.6e-39 165.6 456 34.4
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.9e-38 164.5 502 32.9
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.2e-37 161.8 502 34.3
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.6e-37 160.2 476 33.8
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 3.6e-37 160.2 390 35.4
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.8e-36 157.9 519 32.6
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.3e-36 157.5 526 35.4
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 3.1e-36 157.1 519 32.2
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 5.2e-36 156.4 494 32.4
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 2.0e-35 154.5 462 34.0
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 2.6e-35 154.1 470 38.7
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.4e-35 153.7 552 33.9
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 5.8e-35 152.9 339 40.4
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 2.9e-34 150.6 552 33.7
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.4e-33 147.5 473 35.7
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 3.2e-33 147.1 452 36.5
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.1e-33 146.7 369 41.7
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.2e-32 145.2 196 46.4
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 6.0e-32 142.9 488 31.8
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 6.0e-32 142.9 405 31.9
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 4.3e-30 136.7 188 47.9
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.8e-29 134.0 392 40.3
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.2e-27 128.6 284 35.6
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 4.4e-27 126.7 411 35.3
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 7.5e-27 125.9 415 32.5
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 7.5e-27 125.9 476 30.5
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.9e-26 124.0 547 32.2
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 6.4e-26 122.9 382 34.0
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 8.3e-26 122.5 382 32.7
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 9.2e-25 119.0 430 34.0
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.8e-24 115.9 164 47.0
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.7e-23 114.8 395 31.6
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.0e-23 114.0 407 33.9
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.9e-23 113.6 426 34.5
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 5.1e-23 113.2 417 34.5
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 3.3e-22 110.5 452 32.1
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.6e-21 108.2 404 33.9
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 3.6e-21 107.1 518 28.0
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.8e-20 104.8 407 33.4
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.0e-19 101.3 388 30.2
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.9e-18 97.4 135 45.2
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 4.9e-18 96.7 425 30.6
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.4e-17 95.1 177 45.8
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.4e-17 95.1 417 28.8
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 2.4e-17 94.4 506 32.8
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 7.1e-17 92.8 393 32.1
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 1.2e-16 92.0 404 29.7
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 6.0e-16 89.7 133 57.1
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 6.0e-16 89.7 185 38.9
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.7e-15 88.2 342 28.9
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 2.5e-14 84.3 160 38.8
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 5.6e-14 83.2 545 27.0
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.1e-12 79.0 497 25.6
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.4e-12 77.8 103 52.4
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.0e-12 77.0 329 30.7
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 6.8e-12 76.3 152 37.5
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 7.6e-11 72.8 384 28.9
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.3e-10 72.0 384 28.9
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 4.9e-10 70.1 347 25.9
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 4.2e-09 67.0 84 47.6
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.0e-07 60.8 83 47.0
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 3.9e-07 60.5 130 36.2
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.1e-06 58.9 83 45.8
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.9e-06 58.2 290 27.6
BcaNung00969 Brassica carinata HOM05D003733 ORTHO05D004035 7.3e-06 56.2 123 44.7


User provided reference genes

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