Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 4.0e-53 211.1 101 100.0
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.6e-44 181.8 100 85.0
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.6e-44 180.3 100 85.0
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.2e-43 178.7 100 84.0
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 6.5e-43 177.2 100 86.0
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 8.4e-43 176.8 100 84.0
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 8.4e-43 176.8 101 85.1
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.1e-42 176.4 101 82.2
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.4e-42 176.0 101 84.2
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 3.2e-42 174.9 99 83.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 9.3e-42 173.3 102 82.4
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.6e-41 172.6 99 83.8
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 2.1e-41 172.2 101 84.2
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.1e-41 172.2 100 83.0
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.7e-41 171.8 104 81.7
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.7e-41 171.8 104 81.7
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.6e-41 171.0 104 81.7
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 4.6e-41 171.0 99 80.8
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 6.0e-41 170.6 99 82.8
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 6.0e-41 170.6 99 82.8
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.0e-40 169.9 104 80.8
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.0e-40 169.9 104 80.8
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.3e-40 169.5 102 79.4
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.3e-40 168.7 101 79.2
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.0e-40 168.3 100 81.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 5.1e-40 167.5 100 80.0
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 6.7e-40 167.2 100 79.0
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 8.7e-40 166.8 101 76.2
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.5e-39 166.0 100 79.0
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.9e-39 165.6 101 79.2
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 2.5e-39 165.2 100 79.0
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 2.5e-39 165.2 100 78.0
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 2.5e-39 165.2 100 78.0
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 4.3e-39 164.5 101 81.2
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 7.4e-39 163.7 101 80.2
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 7.4e-39 163.7 101 77.2
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.3e-38 162.9 101 75.2
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.6e-38 162.5 101 77.2
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 2.1e-38 162.2 100 79.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 2.8e-38 161.8 101 79.2
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 2.8e-38 161.8 101 81.2
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 4.8e-38 161.0 100 79.0
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 8.2e-38 160.2 99 78.8
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.1e-37 159.8 104 73.1
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.1e-37 159.8 100 78.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.4e-37 159.5 90 84.4
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.4e-37 159.5 100 76.0
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.4e-37 158.7 102 74.5
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 2.4e-37 158.7 100 78.0
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.4e-37 158.7 99 77.8
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 3.1e-37 158.3 100 78.0
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 5.3e-37 157.5 100 77.0
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 6.9e-37 157.1 98 75.5
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 6.9e-37 157.1 100 77.0
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 9.0e-37 156.8 104 74.0
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.2e-36 156.4 100 76.0
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.2e-36 156.4 99 76.8
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.5e-36 156.0 103 73.8
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.5e-36 156.0 100 79.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 2.0e-36 155.6 105 75.2
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.0e-36 155.6 99 77.8
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 2.0e-36 155.6 100 75.0
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 3.4e-36 154.8 99 74.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 4.5e-36 154.5 100 79.0
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 4.5e-36 154.5 100 79.0
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 5.9e-36 154.1 99 75.8
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 7.6e-36 153.7 101 77.2
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.3e-35 152.9 90 83.3
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.7e-35 152.5 104 75.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.8e-35 151.4 99 75.8
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.1e-34 149.8 97 73.2
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.1e-34 149.8 99 70.7
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.4e-34 149.4 104 72.1
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 2.5e-34 148.7 103 70.9
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.2e-34 148.3 98 73.5
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 4.2e-34 147.9 98 71.4
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 7.2e-34 147.1 100 71.0
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.6e-33 146.0 128 60.9
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 2.7e-33 145.2 101 69.3
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.6e-33 144.4 100 72.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.6e-33 144.4 100 72.0
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 1.8e-32 142.5 100 68.0
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 3.0e-32 141.7 104 68.3
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 3.0e-32 141.7 103 68.9
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.9e-32 141.4 90 76.7
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 5.1e-32 141.0 104 70.2
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 6.7e-32 140.6 100 67.0
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 6.7e-32 140.6 101 69.3
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 1.9e-31 139.0 103 66.0
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 3.3e-31 138.3 90 71.1
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 4.3e-31 137.9 103 69.9
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 7.4e-31 137.1 104 65.4
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.3e-30 136.3 104 71.2
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.3e-30 136.3 103 68.9
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.6e-30 136.0 98 66.3
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.6e-30 136.0 98 66.3
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 2.8e-30 135.2 89 74.2
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 2.8e-30 135.2 105 63.8
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 4.8e-30 134.4 101 63.4
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 1.1e-29 133.3 101 70.3
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.1e-29 133.3 100 65.0
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.1e-29 133.3 101 67.3
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.8e-29 132.5 103 66.0
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.4e-29 132.1 101 67.3
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.4e-29 132.1 90 74.4
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.4e-29 132.1 88 73.9
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 3.1e-29 131.7 100 65.0
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 4.1e-29 131.3 100 63.0
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 6.9e-29 130.6 94 64.9
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 3.4e-28 128.3 102 65.7
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 3.4e-28 128.3 99 67.7
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 7.7e-28 127.1 91 70.3
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 7.7e-28 127.1 91 71.4
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 7.7e-28 127.1 102 65.7
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 7.7e-28 127.1 102 65.7
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.7e-27 125.9 82 69.5
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.2e-27 125.6 89 70.8
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 3.8e-27 124.8 101 63.4
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.4e-26 122.9 89 67.4
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 4.2e-26 121.3 86 68.6
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 5.5e-26 120.9 89 68.5
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.6e-25 119.4 92 66.3
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 8.8e-24 113.6 93 64.5
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 7.4e-23 110.5 101 60.4
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.2e-22 109.0 90 57.8
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.4e-21 106.3 92 58.7
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 5.3e-21 104.4 78 64.1
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 9.1e-21 103.6 80 70.0
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.2e-20 103.2 91 59.3
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 3.4e-20 101.7 75 72.0
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 1.0e-19 100.1 103 55.3
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 3.8e-19 98.2 75 73.3
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 6.5e-19 97.4 50 82.0
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 5.5e-18 94.4 96 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.6e-17 92.8 96 51.0
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.9e-17 90.5 75 66.7
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.8e-16 89.4 75 61.3
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 9.7e-15 83.6 111 48.6
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 6.3e-14 80.9 78 57.7
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 8.2e-14 80.5 77 59.7
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 9.1e-13 77.0 101 41.6
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.0e-12 75.9 75 49.3
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 2.6e-12 75.5 78 57.7
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.2e-11 72.4 91 48.4
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 2.2e-11 72.4 66 53.0
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 9.4e-10 67.0 61 50.8
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.7e-09 65.5 40 70.0
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 8.0e-09 63.9 53 67.9
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 8.0e-09 63.9 53 67.9
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 1.8e-08 62.8 60 58.3
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 1.5e-07 59.7 95 35.8
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 2.8e-06 55.5 42 57.1
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 3.7e-06 55.1 92 33.7


User provided reference genes

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