Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1069 Acer truncatum HOM05D000424 ORTHO05D000355 2.7e-63 245.4 139 100.0
Ciclev10025134m.g Citrus clementina HOM05D000424 ORTHO05D000355 1.1e-24 117.1 116 59.5
Cpa.g.sc129.66 Carica papaya HOM05D000424 ORTHO05D000355 3.2e-16 89.0 145 43.4
Thecc.01G077400 Theobroma cacao HOM05D000424 ORTHO05D000355 1.2e-15 87.0 132 43.2
COL.COLO4_11624 Corchorus olitorius HOM05D000424 ORTHO05D000355 6.6e-14 81.3 125 42.4
Gohir.D03G031000 Gossypium hirsutum HOM05D000424 ORTHO05D000355 1.9e-13 79.7 119 43.7
Gorai.003G032600 Gossypium raimondii HOM05D000424 ORTHO05D000355 1.9e-13 79.7 119 43.7
VMungo1080G1240 Vigna mungo HOM05D000424 ORTHO05D000355 1.9e-13 79.7 47 76.6
SGA_v2.0_scaffold13G06403 Striga asiatica HOM05D000424 ORTHO05D000355 2.5e-13 79.3 49 73.5
SGA_v2.0_scaffold373G50176 Striga asiatica HOM05D000424 ORTHO05D000355 2.5e-13 79.3 49 73.5
CSS0011638 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 4.3e-13 78.6 49 73.5
Cfa006779 Carpinus fangiana HOM05D000424 ORTHO05D000355 5.6e-13 78.2 50 70.0
Glyma.15G019900 Glycine max HOM05D000424 ORTHO05D000355 5.6e-13 78.2 49 71.4
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 9.6e-13 77.4 102 45.1
Potri.002G176100 Populus trichocarpa HOM05D000424 ORTHO05D000355 9.6e-13 77.4 55 67.3
Ah.03g140170 Amaranthus hybridus HOM05D000424 ORTHO05D000355 1.3e-12 77.0 106 45.3
QL08p038611 Quercus lobata HOM05D000424 ORTHO05D000355 1.3e-12 77.0 53 66.0
Oeu013346.1 Olea europaea HOM05D000424 ORTHO05D000355 1.6e-12 76.6 46 76.1
QL02p049542 Quercus lobata HOM05D000424 ORTHO05D000355 1.6e-12 76.6 90 46.7
Rhsim08G0089900 Rhododendron simsii HOM05D000424 ORTHO05D000355 1.6e-12 76.6 49 69.4
Lj6g0020430 Lotus japonicus HOM05D000424 ORTHO05D000355 2.1e-12 76.3 46 76.1
Lalb_Chr13g0290421 Lupinus albus HOM05D000424 ORTHO05D000355 2.1e-12 76.3 46 76.1
TAR381G0265 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.1e-12 76.3 83 50.6
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 2.8e-12 75.9 46 73.9
CAN.G574.31 Capsicum annuum HOM05D000424 ORTHO05D000355 3.6e-12 75.5 54 70.4
Gohir.A02G149300 Gossypium hirsutum HOM05D000424 ORTHO05D000355 3.6e-12 75.5 119 42.0
Medtr8g071300 Medicago truncatula HOM05D000424 ORTHO05D000355 3.6e-12 75.5 46 76.1
arahy.Tifrunner.gnm1.ann1.44AK4G Arachis hypogaea HOM05D000424 ORTHO05D000355 4.8e-12 75.1 46 69.6
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 4.8e-12 75.1 53 66.0
BcaB02g09900 Brassica carinata HOM05D000424 ORTHO05D000355 4.8e-12 75.1 116 42.2
Dinv26965 Davidia involucrata HOM05D000424 ORTHO05D000355 4.8e-12 75.1 108 46.3
PGSC0003DMG400034554 Solanum tuberosum HOM05D000424 ORTHO05D000355 4.8e-12 75.1 113 42.5
THA.LOC104827758 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 4.8e-12 75.1 110 47.3
CSS0044152 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 6.2e-12 74.7 155 36.8
CiPaw.07G037000 Carya illinoinensis HOM05D000424 ORTHO05D000355 6.2e-12 74.7 46 73.9
AUR62004038 Chenopodium quinoa HOM05D000424 ORTHO05D000355 6.2e-12 74.7 46 76.1
AUR62007548 Chenopodium quinoa HOM05D000424 ORTHO05D000355 6.2e-12 74.7 46 76.1
Ca_27130_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 6.2e-12 74.7 46 73.9
ECA236G4494 Erigeron canadensis HOM05D000032 ORTHO05D003522 6.2e-12 74.7 46 76.1
TPR.G8466 Trifolium pratense HOM05D000424 ORTHO05D000355 6.2e-12 74.7 95 45.3
CANSAT25G1384 Cannabis sativa HOM05D000424 ORTHO05D000355 8.1e-12 74.3 46 76.1
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 8.1e-12 74.3 125 42.4
Actinidia01390 Actinidia chinensis HOM05D000424 ORTHO05D000355 1.1e-11 73.9 104 42.3
FvH4_1g18320 Fragaria vesca HOM05D000424 ORTHO05D000355 1.1e-11 73.9 45 77.8
FAN19G2437 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.1e-11 73.9 45 77.8
FAN26G1072 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.1e-11 73.9 45 77.8
HanXRQChr06g0172281 Helianthus annuus HOM05D000424 ORTHO05D000355 1.1e-11 73.9 46 71.7
RcHm_v2.0_Chr2g0108971 Rosa chinensis HOM05D000424 ORTHO05D000355 1.1e-11 73.9 45 77.8
A06p32690 Brassica napus HOM05D000424 ORTHO05D000355 1.4e-11 73.6 125 41.6
BraA06t26198Z Brassica rapa HOM05D000424 ORTHO05D000355 1.4e-11 73.6 125 41.6
Sabra02G0137600 Salix brachista HOM05D000424 ORTHO05D000355 1.4e-11 73.6 105 43.8
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.8e-11 73.2 111 43.2
Prupe.6G215900 Prunus persica HOM05D000424 ORTHO05D000355 1.8e-11 73.2 127 43.3
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 2.4e-11 72.8 46 73.9
Lj4P166T39 Lonicera japonica HOM05D000424 ORTHO05D000355 2.4e-11 72.8 46 71.7
Nitab4.5_0000020g0300 Nicotiana tabacum HOM05D000424 ORTHO05D000355 2.4e-11 72.8 49 67.3
Nitab4.5_0010740g0020 Nicotiana tabacum HOM05D000424 ORTHO05D000355 2.4e-11 72.8 46 69.6
Solyc01g007267.1 Solanum lycopersicum HOM05D000424 ORTHO05D000355 2.4e-11 72.8 113 41.6
Sopen01g003270 Solanum pennellii HOM05D000424 ORTHO05D000355 2.4e-11 72.8 113 41.6
FAN23G2322 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.1e-11 72.4 45 75.6
Aa31LG1G16260 Aethionema arabicum HOM05D001904 ORTHO05D001854 4.0e-11 72.0 46 73.9
FAN28G0499 Fragaria x ananassa HOM05D006441 ORTHO05D000355 4.0e-11 72.0 45 75.6
ClCG01G017840 Citrullus lanatus HOM05D000424 ORTHO05D000355 5.3e-11 71.6 46 71.7
Duzib147G1340 Durio zibethinus HOM05D000424 ORTHO05D000355 5.3e-11 71.6 46 73.9
SHI12026 Sapria himalayana HOM05D000424 ORTHO05D000355 5.3e-11 71.6 56 57.1
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 6.9e-11 71.2 125 40.8
BcaC01g02831 Brassica carinata HOM05D000424 ORTHO05D000355 6.9e-11 71.2 115 41.7
Carub.0008s2671 Capsella rubella HOM05D000424 ORTHO05D000355 6.9e-11 71.2 46 73.9
MELO3C026690.2 Cucumis melo HOM05D000424 ORTHO05D000355 6.9e-11 71.2 46 69.6
C03p59840 Brassica napus HOM05D000424 ORTHO05D000355 9.0e-11 70.9 115 41.7
BolC3t18248H Brassica oleracea HOM05D000424 ORTHO05D000355 9.0e-11 70.9 115 41.7
Migut.L00219 Erythranthe guttata HOM05D000424 ORTHO05D000355 9.0e-11 70.9 46 71.7
Sed0020730 Sechium edule HOM05D000424 ORTHO05D000355 9.0e-11 70.9 104 45.2
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 1.5e-10 70.1 125 42.4
PGR102G2719 Punica granatum HOM05D000424 ORTHO05D000355 1.5e-10 70.1 53 67.9
Haze_06174 Corylus avellana HOM05D000424 ORTHO05D000355 2.6e-10 69.3 49 67.3
Nn2g14733 Nelumbo nucifera HOM05D000424 ORTHO05D000355 2.6e-10 69.3 46 67.4
Aqoxy6G02961 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 3.4e-10 68.9 114 39.5
arahy.Tifrunner.gnm1.ann1.DPM4Y6 Arachis hypogaea HOM05D000424 ORTHO05D000355 3.4e-10 68.9 46 67.4
CsaV3_5G014140 Cucumis sativus L. HOM05D000424 ORTHO05D000355 7.6e-10 67.8 116 41.4
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 7.6e-10 67.8 46 67.4
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 9.9e-10 67.4 52 63.5
AL5G29690 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 1.7e-09 66.6 46 69.6
CARHR279810 Cardamine hirsuta HOM05D000424 ORTHO05D000355 1.7e-09 66.6 125 41.6
CARHR158820 Cardamine hirsuta HOM05D000424 ORTHO05D000355 2.2e-09 66.2 118 37.3
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 3.8e-09 65.5 128 42.2
HPP92_008936 Vanilla planifolia HOM05D000424 ORTHO05D000355 4.9e-09 65.1 62 50.0
AT3G49730 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 8.4e-09 64.3 46 69.6
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 8.4e-09 64.3 46 67.4
arahy.Tifrunner.gnm1.ann1.C70X24 Arachis hypogaea HOM05D000424 ORTHO05D000355 1.9e-08 63.2 39 71.8
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 3.2e-08 62.4 46 65.2
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 3.2e-08 62.4 46 65.2
Hma1.2p1_1032F.1_g250150 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 3.2e-08 62.4 46 60.9
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 4.2e-08 62.0 46 65.2
MBI16_g09817_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 5.4e-08 61.6 49 61.2
PSO675G2454 Papaver somniferum HOM05D000424 ORTHO05D000355 5.4e-08 61.6 110 39.1
PSO541G2131 Papaver somniferum HOM05D000424 ORTHO05D000355 2.1e-07 59.7 119 36.1
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 2.7e-07 59.3 47 63.8
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 2.7e-07 59.3 50 56.0
Aqoxy7G01960 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 7.9e-07 57.8 39 69.2
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.0e-06 57.4 49 61.2
GSVIVG01007280001 Vitis vinifera HOM05D000424 ORTHO05D000355 1.3e-06 57.0 33 75.8
Cc04_g06170 Coffea canephora HOM05D000424 ORTHO05D000355 2.3e-06 56.2 34 73.5


User provided reference genes

Program Settings