Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 4.8e-24 113.6 55 100.0
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 7.1e-20 99.8 55 87.3
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 7.1e-20 99.8 55 87.3
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 3.5e-19 97.4 53 84.9
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 1.3e-18 95.5 55 80.0
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 1.8e-18 95.1 55 81.8
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 2.3e-18 94.7 55 80.0
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 2.3e-18 94.7 55 80.0
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 2.3e-18 94.7 55 81.8
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 3.9e-18 94.0 54 79.6
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 5.1e-18 93.6 55 81.8
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 8.7e-18 92.8 55 80.0
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 1.1e-17 92.4 52 84.6
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 1.9e-17 91.7 54 77.8
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 2.5e-17 91.3 55 78.2
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 3.3e-17 90.9 50 84.0
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 3.3e-17 90.9 55 74.5
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 4.3e-17 90.5 52 78.8
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 7.4e-17 89.7 50 86.0
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 7.4e-17 89.7 55 76.4
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 9.6e-17 89.4 55 74.5
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 1.3e-16 89.0 54 75.9
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 1.6e-16 88.6 53 77.4
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 1.6e-16 88.6 54 79.6
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 3.7e-16 87.4 56 76.8
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 6.2e-16 86.7 54 77.8
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 8.2e-16 86.3 52 78.8
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 2.4e-15 84.7 61 72.1
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 2.4e-15 84.7 52 76.9
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 1.5e-14 82.0 55 70.9
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 3.4e-14 80.9 54 70.4
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 3.4e-14 80.9 54 70.4
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 3.4e-14 80.9 54 70.4
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 5.8e-14 80.1 50 84.0
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 1.7e-13 78.6 58 69.0
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 2.2e-13 78.2 54 68.5
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 2.2e-13 78.2 54 68.5
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 2.2e-13 78.2 54 68.5
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 2.2e-13 78.2 54 68.5
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 2.9e-13 77.8 53 71.7
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 2.9e-13 77.8 47 80.9
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 3.8e-13 77.4 53 71.7
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 5.0e-13 77.0 61 65.6
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 8.4e-13 76.3 38 86.8
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 1.4e-12 75.5 37 89.2
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 1.4e-12 75.5 37 89.2
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 1.9e-12 75.1 63 61.9
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 1.9e-12 75.1 61 60.7
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 3.2e-12 74.3 57 64.9
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 4.2e-12 73.9 56 67.9
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 5.5e-12 73.6 36 88.9
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 1.6e-11 72.0 38 84.2
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 4.6e-11 70.5 101 42.6
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 1.3e-10 68.9 34 88.2
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 1.3e-10 68.9 34 88.2
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 6.7e-10 66.6 37 81.1
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 6.7e-10 66.6 37 81.1
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 1.5e-09 65.5 35 85.7
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 1.9e-09 65.1 36 80.6
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 3.7e-08 60.8 53 58.5
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 2.4e-07 58.2 36 75.0
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 3.1e-07 57.8 31 80.6
DCAR_021460 Daucus carota HOM05D008250 ORTHO05D010361 3.4e-06 54.3 37 67.6


User provided reference genes

Program Settings