Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1046 Acer truncatum HOM05D002862 ORTHO05D003198 1.1e-75 286.6 142 100.0
Ciclev10026170m.g Citrus clementina HOM05D002862 ORTHO05D003198 1.4e-38 163.3 137 63.5
Sabra07G0004700 Salix brachista HOM05D002862 ORTHO05D003198 2.3e-38 162.5 138 62.3
Manes.12G116400 Manihot esculenta HOM05D002862 ORTHO05D003198 2.2e-36 156.0 140 62.1
Potri.007G006300 Populus trichocarpa HOM05D002862 ORTHO05D003198 3.1e-35 152.1 138 60.9
Thecc.01G075100 Theobroma cacao HOM05D002862 ORTHO05D003198 1.0e-33 147.1 142 55.6
Gohir.A11G212900 Gossypium hirsutum HOM05D002862 ORTHO05D003198 1.5e-32 143.3 143 55.2
Gohir.D11G210300 Gossypium hirsutum HOM05D002862 ORTHO05D003198 1.5e-32 143.3 143 55.2
Gorai.007G225600 Gossypium raimondii HOM05D002862 ORTHO05D003198 1.5e-32 143.3 143 55.2
CiPaw.16G049000 Carya illinoinensis HOM05D002862 ORTHO05D003198 4.2e-32 141.7 140 56.4
QL06p039079 Quercus lobata HOM05D002862 ORTHO05D003198 7.2e-32 141.0 144 56.9
Actinidia16417 Actinidia chinensis HOM05D002862 ORTHO05D003198 2.7e-31 139.0 142 55.6
Haze_15263 Corylus avellana HOM05D002862 ORTHO05D003198 4.7e-31 138.3 138 54.3
Cpa.g.sc129.79 Carica papaya HOM05D002862 ORTHO05D003198 6.1e-31 137.9 140 56.4
Rhsim08G0092300 Rhododendron simsii HOM05D002862 ORTHO05D003198 8.0e-31 137.5 137 54.0
vmacro18020 Vaccinium macrocarpon HOM05D002862 ORTHO05D003198 8.0e-31 137.5 125 62.4
FvH4_1g18030 Fragaria vesca HOM05D002862 ORTHO05D003198 5.7e-29 131.3 141 54.6
FAN19G2081 Fragaria x ananassa HOM05D002862 ORTHO05D003198 5.7e-29 131.3 141 54.6
Hma1.2p1_1760F.1_g301260 Hydrangea macrophylla HOM05D002862 ORTHO05D003198 5.7e-29 131.3 137 52.6
Nn2g14607 Nelumbo nucifera HOM05D002862 ORTHO05D003198 5.7e-29 131.3 141 52.5
AL4G12460 Arabidopsis lyrata HOM05D002862 ORTHO05D003198 1.3e-28 130.2 141 51.1
Dinv26951 Davidia involucrata HOM05D002862 ORTHO05D003198 2.2e-28 129.4 149 49.0
AT2G22870 Arabidopsis thaliana HOM05D002862 ORTHO05D003198 3.7e-28 128.6 141 50.4
AL3G48210 Arabidopsis lyrata HOM05D002862 ORTHO05D003198 6.3e-28 127.9 142 51.4
Eucgr.C00645 Eucalyptus grandis HOM05D002862 ORTHO05D003198 1.8e-27 126.3 139 52.5
Sed0007143 Sechium edule HOM05D002862 ORTHO05D003198 2.4e-27 125.9 110 57.3
CSS0048608 Camellia sinensis var. sinensis HOM05D002862 ORTHO05D003198 3.1e-27 125.6 139 53.2
TAR376G0375 Trochodendron aralioides HOM05D002862 ORTHO05D003198 4.1e-27 125.2 137 51.8
Carub.0004s0200 Capsella rubella HOM05D002862 ORTHO05D003198 7.0e-27 124.4 139 50.4
CARHR114190 Cardamine hirsuta HOM05D002862 ORTHO05D003198 7.0e-27 124.4 139 51.1
ClCG02G012180 Citrullus lanatus HOM05D002862 ORTHO05D003198 9.1e-27 124.0 127 53.5
FAN26G0853 Fragaria x ananassa HOM05D002862 ORTHO05D003198 9.1e-27 124.0 139 52.5
Lsat_1_v5_gn_3_86620 Lactuca sativa HOM05D002862 ORTHO05D003198 5.9e-26 121.3 111 55.0
MD17G1236700 Malus domestica HOM05D002862 ORTHO05D003198 5.9e-26 121.3 144 52.8
PSO675G3570 Papaver somniferum HOM05D002862 ORTHO05D003198 7.7e-26 120.9 146 50.0
RcHm_v2.0_Chr2g0108521 Rosa chinensis HOM05D002862 ORTHO05D003198 7.7e-26 120.9 142 53.5
Sp4g01920 Schrenkiella parvula HOM05D002862 ORTHO05D003198 7.7e-26 120.9 142 49.3
SGA_v2.0_scaffold174G39234 Striga asiatica HOM05D002862 ORTHO05D003198 1.0e-25 120.6 142 48.6
TWI74G1019 Tripterygium wilfordii HOM05D002862 ORTHO05D003198 1.0e-25 120.6 131 52.7
CDE07G0095 Ceratophyllum demersum HOM05D000091 ORTHO05D006279 1.3e-25 120.2 143 49.0
Lj4A164G32 Lonicera japonica HOM05D002862 ORTHO05D003198 2.2e-25 119.4 131 49.6
HanXRQChr12g0376301 Helianthus annuus HOM05D002862 ORTHO05D003198 2.9e-25 119.0 136 47.8
Thhalv10000265m.g Eutrema salsugineum HOM05D002862 ORTHO05D003198 5.0e-25 118.2 121 51.2
Prupe.6G218100 Prunus persica HOM05D002862 ORTHO05D003198 5.0e-25 118.2 142 53.5
MELO3C020844.2 Cucumis melo HOM05D002862 ORTHO05D003198 6.5e-25 117.9 143 48.3
C04p52210 Brassica napus HOM05D002862 ORTHO05D003198 8.5e-25 117.5 138 50.0
COL.COLO4_11603 Corchorus olitorius HOM05D002862 ORTHO05D003198 8.5e-25 117.5 78 67.9
BcaB06g27847 Brassica carinata HOM05D002862 ORTHO05D003198 1.1e-24 117.1 142 49.3
AUR62039388 Chenopodium quinoa HOM05D002862 ORTHO05D003198 1.1e-24 117.1 143 49.0
Aa31LG7G13920 Aethionema arabicum HOM05D002862 ORTHO05D003198 1.9e-24 116.3 139 51.1
BcaC02g08588 Brassica carinata HOM05D002862 ORTHO05D003198 2.5e-24 115.9 140 50.7
BolC4t26797H Brassica oleracea HOM05D002862 ORTHO05D003198 2.5e-24 115.9 140 50.7
PGR102G3097 Punica granatum HOM05D002862 ORTHO05D003198 3.2e-24 115.5 141 48.9
A04p17440 Brassica napus HOM05D002862 ORTHO05D003198 4.2e-24 115.2 89 62.9
BraA04t17367Z Brassica rapa HOM05D002862 ORTHO05D003198 4.2e-24 115.2 89 62.9
Oeu054205.1 Olea europaea HOM05D002862 ORTHO05D003198 7.2e-24 114.4 100 57.0
FAN23G0038 Fragaria x ananassa HOM05D002862 ORTHO05D003198 9.4e-24 114.0 145 48.3
FAN24G3011 Fragaria x ananassa HOM05D002862 ORTHO05D003198 9.4e-24 114.0 145 48.3
PSO541G0096 Papaver somniferum HOM05D002862 ORTHO05D003198 1.6e-23 113.2 144 47.2
AUR62014573 Chenopodium quinoa HOM05D002862 ORTHO05D003198 4.7e-23 111.7 143 48.3
SalBow5G0101 Salvia bowleyana HOM05D002862 ORTHO05D003198 4.7e-23 111.7 136 42.6
Ah.09g223820 Amaranthus hybridus HOM05D002862 ORTHO05D003198 8.0e-23 110.9 123 52.0
Nitab4.5_0012393g0010 Nicotiana tabacum HOM05D002862 ORTHO05D003198 8.0e-23 110.9 119 56.3
Nitab4.5_0000680g0160 Nicotiana tabacum HOM05D002862 ORTHO05D003198 1.0e-22 110.5 127 53.5
Cc10_g12600 Coffea canephora HOM05D002862 ORTHO05D003198 1.4e-22 110.2 92 57.6
Sc07g0000470 Simmondsia chinensis HOM05D002862 ORTHO05D003198 1.4e-22 110.2 77 63.6
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 1.8e-22 109.8 123 51.2
unitig_748.g8478 Utricularia gibba HOM05D002862 ORTHO05D003198 1.8e-22 109.8 116 49.1
TAR628G0486 Trochodendron aralioides HOM05D002862 ORTHO05D003198 2.3e-22 109.4 78 62.8
Migut.L00425 Erythranthe guttata HOM05D002862 ORTHO05D003198 3.0e-22 109.0 72 69.4
Duzib264G1047 Durio zibethinus HOM05D002862 ORTHO05D003198 5.2e-22 108.2 105 54.3
Peaxi162Scf00500g00313 Petunia axillaris HOM05D002862 ORTHO05D003198 8.8e-22 107.5 94 58.5
arahy.Tifrunner.gnm1.ann1.P7A8AZ Arachis hypogaea HOM05D002862 ORTHO05D003198 1.5e-21 106.7 137 46.0
arahy.Tifrunner.gnm1.ann1.F9UFYB Arachis hypogaea HOM05D002862 ORTHO05D003198 4.4e-21 105.1 137 46.7
Lj4g0003930 Lotus japonicus HOM05D002862 ORTHO05D003198 4.4e-21 105.1 92 60.9
Solyc09g008730.3 Solanum lycopersicum HOM05D002862 ORTHO05D003198 1.3e-20 103.6 97 56.7
Sopen09g003520 Solanum pennellii HOM05D002862 ORTHO05D003198 1.3e-20 103.6 97 56.7
PGSC0003DMG400012984 Solanum tuberosum HOM05D002862 ORTHO05D003198 1.3e-20 103.6 97 56.7
Lalb_Chr16g0383771 Lupinus albus HOM05D002862 ORTHO05D003198 2.2e-20 102.8 104 52.9
Hund16411 Selenicereus undatus HOM05D002862 ORTHO05D003198 2.2e-20 102.8 139 46.0
Glyma.07G196900 Glycine max HOM05D002862 ORTHO05D003198 4.8e-20 101.7 96 52.1
ATR0739G207 Amborella trichopoda HOM05D002862 ORTHO05D003198 8.3e-20 100.9 80 55.0
arahy.Tifrunner.gnm1.ann1.9L0EV7 Arachis hypogaea HOM05D002862 ORTHO05D003198 8.3e-20 100.9 71 64.8
arahy.Tifrunner.gnm1.ann1.R3YPZT Arachis hypogaea HOM05D002862 ORTHO05D003198 8.3e-20 100.9 71 64.8
Glyma.13G179400 Glycine max HOM05D002862 ORTHO05D003198 8.3e-20 100.9 96 53.1
ECA246G4108 Erigeron canadensis HOM05D000485 ORTHO05D000341 1.4e-19 100.1 94 50.0
Psat7g113880 Pisum sativum HOM05D002862 ORTHO05D003198 1.4e-19 100.1 106 52.8
Medtr4g088800 Medicago truncatula HOM05D002862 ORTHO05D003198 5.4e-19 98.2 133 45.1
HPP92_011416 Vanilla planifolia HOM05D002862 ORTHO05D003198 7.0e-19 97.8 70 62.9
Ca_29971_v3 Cicer arietinum L. HOM05D002862 ORTHO05D003198 1.6e-18 96.7 106 50.0
TPR.G12013 Trifolium pratense HOM05D002862 ORTHO05D003198 1.6e-18 96.7 127 45.7
VMungo0251G3644 Vigna mungo HOM05D002862 ORTHO05D003198 1.6e-18 96.7 81 58.0
FAN28G0266 Fragaria x ananassa HOM05D002862 ORTHO05D003198 4.5e-18 95.1 64 67.2
Phvul.002G228800 Phaseolus vulgaris HOM05D002862 ORTHO05D003198 1.0e-17 94.0 81 56.8
Zm00001eb399460 Zea mays HOM05D002862 ORTHO05D003198 1.0e-17 94.0 143 42.0
Os03g0232500 Oryza sativa ssp. japonica HOM05D002862 ORTHO05D003198 5.0e-17 91.7 145 38.6
SEGI_15248 Sequoiadendron giganteum HOM05D002862 ORTHO05D003198 5.0e-17 91.7 68 60.3
Aqoxy6G02533 Aquilegia oxysepala HOM05D002862 ORTHO05D003198 1.0e-14 84.0 52 75.0
GSVIVG01002339001 Vitis vinifera HOM05D002862 ORTHO05D003198 3.0e-14 82.4 52 71.2
CAN.G1830.4 Capsicum annuum HOM05D002862 ORTHO05D003198 1.2e-13 80.5 64 59.4
CsaV3_2G016330 Cucumis sativus L. HOM05D002862 ORTHO05D003198 4.4e-13 78.6 52 69.2
Ca_18545_v3 Cicer arietinum L. HOM05D002862 ORTHO05D003198 5.4e-11 71.6 52 63.5
Potri.014G007450 Populus trichocarpa HOM05D002862 ORTHO05D003198 2.0e-10 69.7 52 65.4
SEGI_21000 Sequoiadendron giganteum HOM05D002862 ORTHO05D003198 1.7e-09 66.6 113 34.5
CDE04G2191 Ceratophyllum demersum HOM05D002862 ORTHO05D003198 2.3e-09 66.2 52 63.5
TWI34G0386 Tripterygium wilfordii HOM05D002862 ORTHO05D003198 1.5e-08 63.5 125 32.0
ATR0315G008 Amborella trichopoda HOM05D002862 ORTHO05D003198 1.9e-08 63.2 86 43.0
Zm00001eb154100 Zea mays HOM05D002862 ORTHO05D003198 1.9e-08 63.2 148 33.8
Duzib150G0929 Durio zibethinus HOM05D002862 ORTHO05D003198 2.5e-08 62.8 140 34.3
Manes.16G066300 Manihot esculenta HOM05D002862 ORTHO05D003198 4.3e-08 62.0 144 32.6
Sc09g0009020 Simmondsia chinensis HOM05D002862 ORTHO05D003198 5.6e-08 61.6 87 39.1
CAN.G797.8 Capsicum annuum HOM05D002862 ORTHO05D003198 9.5e-08 60.8 129 32.6
Nitab4.5_0000052g0070 Nicotiana tabacum HOM05D002862 ORTHO05D003198 1.2e-07 60.5 70 42.9
Nitab4.5_0003338g0040 Nicotiana tabacum HOM05D002862 ORTHO05D003198 1.2e-07 60.5 70 42.9
COL.COLO4_18701 Corchorus olitorius HOM05D002862 ORTHO05D003198 1.6e-07 60.1 133 35.3
Oeu041403.1 Olea europaea HOM05D002862 ORTHO05D003198 2.8e-07 59.3 134 32.8
Potri.006G243200 Populus trichocarpa HOM05D002862 ORTHO05D003198 2.8e-07 59.3 134 32.1
SGA_v2.0_scaffold243G44302 Striga asiatica HOM05D002862 ORTHO05D003198 2.8e-07 59.3 132 29.5
Atru.chr7.2168 Acer truncatum HOM05D002862 ORTHO05D003198 3.6e-07 58.9 136 34.6
Ciclev10009000m.g Citrus clementina HOM05D002862 ORTHO05D003198 3.6e-07 58.9 132 32.6
Potri.018G037000 Populus trichocarpa HOM05D002862 ORTHO05D003198 3.6e-07 58.9 142 33.8
Thecc.09G039300 Theobroma cacao HOM05D002862 ORTHO05D003198 3.6e-07 58.9 70 45.7
PGR031G3298 Punica granatum HOM05D002862 ORTHO05D003198 4.7e-07 58.5 70 44.3
CsaV3_3G047350 Cucumis sativus L. HOM05D002862 ORTHO05D003198 6.1e-07 58.2 67 43.3
MBI04_g22011_MAGBIO Magnolia biondii HOM05D002862 ORTHO05D003198 6.1e-07 58.2 70 42.9
HPP92_007792 Vanilla planifolia HOM05D002862 ORTHO05D003198 6.1e-07 58.2 141 35.5
MELO3C003590.2 Cucumis melo HOM05D002862 ORTHO05D003198 8.0e-07 57.8 67 43.3
Gohir.A06G095200 Gossypium hirsutum HOM05D002862 ORTHO05D003198 8.0e-07 57.8 135 31.9
Cpa.g.sc78.84 Carica papaya HOM05D002862 ORTHO05D003198 1.0e-06 57.4 121 32.2
Cc08_g08950 Coffea canephora HOM05D002862 ORTHO05D003198 1.0e-06 57.4 70 41.4
Os01g0732200 Oryza sativa ssp. japonica HOM05D002862 ORTHO05D003198 1.0e-06 57.4 150 34.7
Sed0004739 Sechium edule HOM05D002862 ORTHO05D003198 1.0e-06 57.4 138 31.9
Solyc08g068200.4 Solanum lycopersicum HOM05D002862 ORTHO05D003198 1.0e-06 57.4 70 42.9
Sopen08g022060 Solanum pennellii HOM05D002862 ORTHO05D003198 1.0e-06 57.4 70 42.9
Gorai.010G109600 Gossypium raimondii HOM05D002862 ORTHO05D003198 1.4e-06 57.0 135 31.9
Aqoxy7G01654 Aquilegia oxysepala HOM05D002862 ORTHO05D003198 1.8e-06 56.6 70 42.9
CSS0026283 Camellia sinensis var. sinensis HOM05D002862 ORTHO05D003198 1.8e-06 56.6 70 42.9
CSS0039934 Camellia sinensis var. sinensis HOM05D002862 ORTHO05D003198 1.8e-06 56.6 70 42.9
Ca_15622_v3 Cicer arietinum L. HOM05D002862 ORTHO05D003198 1.8e-06 56.6 131 32.1
Gohir.D06G095200 Gossypium hirsutum HOM05D002862 ORTHO05D003198 1.8e-06 56.6 135 31.9
CiPaw.07G207700 Carya illinoinensis HOM05D002862 ORTHO05D003198 2.3e-06 56.2 127 32.3
Hma1.2p1_0140F.1_g063535 Hydrangea macrophylla HOM05D002862 ORTHO05D003198 2.3e-06 56.2 70 42.9
Hma1.2p1_0140F.1_g063560 Hydrangea macrophylla HOM05D002862 ORTHO05D003198 2.3e-06 56.2 70 42.9
PGSC0003DMG400014512 Solanum tuberosum HOM05D002862 ORTHO05D003198 2.3e-06 56.2 70 41.4
GSVIVG01035676001 Vitis vinifera HOM05D002862 ORTHO05D003198 2.3e-06 56.2 70 41.4
vmacro05358 Vaccinium macrocarpon HOM05D002862 ORTHO05D003198 3.0e-06 55.8 70 41.4
VMungo1309G0865 Vigna mungo HOM05D002862 ORTHO05D003198 3.0e-06 55.8 67 44.8
arahy.Tifrunner.gnm1.ann1.IXS3J7 Arachis hypogaea HOM05D002862 ORTHO05D003198 4.0e-06 55.5 141 32.6
Haze_21837 Corylus avellana HOM05D002862 ORTHO05D003198 4.0e-06 55.5 72 45.8
FvH4_2g36200 Fragaria vesca HOM05D002862 ORTHO05D003198 4.0e-06 55.5 134 29.1
FAN27G2254 Fragaria x ananassa HOM05D002862 ORTHO05D003198 4.0e-06 55.5 140 30.7
Lj8A604G30 Lonicera japonica HOM05D002862 ORTHO05D003198 4.0e-06 55.5 71 42.3
MD08G1119000 Malus domestica HOM05D002862 ORTHO05D003198 4.0e-06 55.5 71 40.8
MD15G1098300 Malus domestica HOM05D002862 ORTHO05D003198 4.0e-06 55.5 71 40.8
BcaB01g05482 Brassica carinata HOM05D002862 ORTHO05D003198 5.2e-06 55.1 119 34.5
C03p05760 Brassica napus HOM05D002862 ORTHO05D003198 5.2e-06 55.1 119 34.5
BolC3t13089H Brassica oleracea HOM05D002862 ORTHO05D003198 5.2e-06 55.1 119 34.5
CDE05G3112 Ceratophyllum demersum HOM05D002862 ORTHO05D003198 5.2e-06 55.1 82 37.8
ClCG11G013980 Citrullus lanatus HOM05D002862 ORTHO05D003198 5.2e-06 55.1 96 33.3
FAN20G0698 Fragaria x ananassa HOM05D002862 ORTHO05D003198 5.2e-06 55.1 142 31.0
Prupe.1G453200 Prunus persica HOM05D002862 ORTHO05D003198 5.2e-06 55.1 71 40.8
Sabra18G0037700 Salix brachista HOM05D002862 ORTHO05D003198 5.2e-06 55.1 146 29.5
Aa31LG3G15710 Aethionema arabicum HOM05D002862 ORTHO05D003198 6.8e-06 54.7 73 45.2
MSTRG.25894 Avicennia marina HOM05D002862 ORTHO05D003198 6.8e-06 54.7 102 36.3
A03p05030 Brassica napus HOM05D002862 ORTHO05D003198 6.8e-06 54.7 117 33.3
BraA03t09837Z Brassica rapa HOM05D002862 ORTHO05D003198 6.8e-06 54.7 117 33.3
Sabra06G0190300 Salix brachista HOM05D002862 ORTHO05D003198 6.8e-06 54.7 110 31.8
AL6G22150 Arabidopsis lyrata HOM05D002862 ORTHO05D003198 8.9e-06 54.3 73 43.8
AT5G11480 Arabidopsis thaliana HOM05D002862 ORTHO05D003198 8.9e-06 54.3 73 43.8
AUR62023026 Chenopodium quinoa HOM05D002862 ORTHO05D003198 8.9e-06 54.3 77 39.0
AUR62043356 Chenopodium quinoa HOM05D002862 ORTHO05D003198 8.9e-06 54.3 77 39.0
FAN15G0319 Fragaria x ananassa HOM05D002862 ORTHO05D003198 8.9e-06 54.3 142 31.0
Glyma.06G081500 Glycine max HOM05D002862 ORTHO05D003198 8.9e-06 54.3 67 41.8


User provided reference genes

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